Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26o21
(573 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82901-1|CAI42864.2| 1593|Homo sapiens THO complex 2 protein. 30 5.0
BC063692-1|AAH63692.1| 398|Homo sapiens THOC2 protein protein. 30 5.0
AL030996-6|CAO03526.1| 379|Homo sapiens THO complex 2 protein. 30 5.0
AL030996-3|CAI42271.2| 1593|Homo sapiens THO complex 2 protein. 30 5.0
AL023575-1|CAO03594.1| 1593|Homo sapiens THO complex 2 protein. 30 5.0
AK023659-1|BAB14630.1| 650|Homo sapiens protein ( Homo sapiens ... 30 5.0
AF441770-1|AAM28436.1| 1478|Homo sapiens Tho2 protein. 30 5.0
X05608-1|CAA29097.1| 544|Homo sapiens NF-L protein. 30 6.7
BC039237-1|AAH39237.1| 543|Homo sapiens neurofilament, light po... 30 6.7
AY156690-1|AAN74826.1| 543|Homo sapiens light molecular weight ... 30 6.7
BC020238-1|AAH20238.1| 596|Homo sapiens SRP68 protein protein. 29 8.8
AK074698-1|BAC11145.1| 627|Homo sapiens protein ( Homo sapiens ... 29 8.8
AK027322-1|BAB55041.1| 335|Homo sapiens protein ( Homo sapiens ... 29 8.8
AF195951-1|AAF24308.1| 619|Homo sapiens signal recognition part... 29 8.8
>Z82901-1|CAI42864.2| 1593|Homo sapiens THO complex 2 protein.
Length = 1593
Score = 30.3 bits (65), Expect = 5.0
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = -2
Query: 260 LEVDDMQRETTPEMLRRLRFFCCVDNLVKSRSVLYTSRAHINVFIHKCFACNCIISRVSS 81
LE + Q E +L+RL+ DN + ++S T I F+ C CI S + +
Sbjct: 939 LEEEKKQMEHVQRVLQRLKLE--KDNWLLAKS---TKNETITKFLQLCIFPRCIFSAIDA 993
Query: 80 KYGSRFV 60
Y +RFV
Sbjct: 994 VYCARFV 1000
>BC063692-1|AAH63692.1| 398|Homo sapiens THOC2 protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 5.0
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = -2
Query: 260 LEVDDMQRETTPEMLRRLRFFCCVDNLVKSRSVLYTSRAHINVFIHKCFACNCIISRVSS 81
LE + Q E +L+RL+ DN + ++S T I F+ C CI S + +
Sbjct: 179 LEEEKKQMEHVQRVLQRLKLE--KDNWLLAKS---TKNETITKFLQLCIFPRCIFSAIDA 233
Query: 80 KYGSRFV 60
Y +RFV
Sbjct: 234 VYCARFV 240
>AL030996-6|CAO03526.1| 379|Homo sapiens THO complex 2 protein.
Length = 379
Score = 30.3 bits (65), Expect = 5.0
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = -2
Query: 260 LEVDDMQRETTPEMLRRLRFFCCVDNLVKSRSVLYTSRAHINVFIHKCFACNCIISRVSS 81
LE + Q E +L+RL+ DN + ++S T I F+ C CI S + +
Sbjct: 11 LEEEKKQMEHVQRVLQRLKLE--KDNWLLAKS---TKNETITKFLQLCIFPRCIFSAIDA 65
Query: 80 KYGSRFV 60
Y +RFV
Sbjct: 66 VYCARFV 72
>AL030996-3|CAI42271.2| 1593|Homo sapiens THO complex 2 protein.
Length = 1593
Score = 30.3 bits (65), Expect = 5.0
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = -2
Query: 260 LEVDDMQRETTPEMLRRLRFFCCVDNLVKSRSVLYTSRAHINVFIHKCFACNCIISRVSS 81
LE + Q E +L+RL+ DN + ++S T I F+ C CI S + +
Sbjct: 939 LEEEKKQMEHVQRVLQRLKLE--KDNWLLAKS---TKNETITKFLQLCIFPRCIFSAIDA 993
Query: 80 KYGSRFV 60
Y +RFV
Sbjct: 994 VYCARFV 1000
>AL023575-1|CAO03594.1| 1593|Homo sapiens THO complex 2 protein.
Length = 1593
Score = 30.3 bits (65), Expect = 5.0
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = -2
Query: 260 LEVDDMQRETTPEMLRRLRFFCCVDNLVKSRSVLYTSRAHINVFIHKCFACNCIISRVSS 81
LE + Q E +L+RL+ DN + ++S T I F+ C CI S + +
Sbjct: 939 LEEEKKQMEHVQRVLQRLKLE--KDNWLLAKS---TKNETITKFLQLCIFPRCIFSAIDA 993
Query: 80 KYGSRFV 60
Y +RFV
Sbjct: 994 VYCARFV 1000
>AK023659-1|BAB14630.1| 650|Homo sapiens protein ( Homo sapiens
cDNA FLJ13597 fis, clone PLACE1009798, weakly similar to
RLR1 PROTEIN. ).
Length = 650
Score = 30.3 bits (65), Expect = 5.0
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = -2
Query: 260 LEVDDMQRETTPEMLRRLRFFCCVDNLVKSRSVLYTSRAHINVFIHKCFACNCIISRVSS 81
LE + Q E +L+RL+ DN + ++S T I F+ C CI S + +
Sbjct: 312 LEEEKKQMEHVQRVLQRLKLE--KDNWLLAKS---TKNETITKFLQLCIFPRCIFSAIDA 366
Query: 80 KYGSRFV 60
Y +RFV
Sbjct: 367 VYCARFV 373
>AF441770-1|AAM28436.1| 1478|Homo sapiens Tho2 protein.
Length = 1478
Score = 30.3 bits (65), Expect = 5.0
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = -2
Query: 260 LEVDDMQRETTPEMLRRLRFFCCVDNLVKSRSVLYTSRAHINVFIHKCFACNCIISRVSS 81
LE + Q E +L+RL+ DN + ++S T I F+ C CI S + +
Sbjct: 824 LEEEKKQMEHVQRVLQRLKLE--KDNWLLAKS---TKNETITKFLQLCIFPRCIFSAIDA 878
Query: 80 KYGSRFV 60
Y +RFV
Sbjct: 879 VYCARFV 885
>X05608-1|CAA29097.1| 544|Homo sapiens NF-L protein.
Length = 544
Score = 29.9 bits (64), Expect = 6.7
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +1
Query: 487 ERRLSNSSDGSACSGYSKTSQLVLRRSY 570
E RLS +S GS SGYS++SQ+ R +Y
Sbjct: 398 ETRLSFTSVGSITSGYSQSSQVFGRSAY 425
>BC039237-1|AAH39237.1| 543|Homo sapiens neurofilament, light
polypeptide 68kDa protein.
Length = 543
Score = 29.9 bits (64), Expect = 6.7
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +1
Query: 487 ERRLSNSSDGSACSGYSKTSQLVLRRSY 570
E RLS +S GS SGYS++SQ+ R +Y
Sbjct: 397 ETRLSFTSVGSITSGYSQSSQVFGRSAY 424
>AY156690-1|AAN74826.1| 543|Homo sapiens light molecular weight
neurofilament protein protein.
Length = 543
Score = 29.9 bits (64), Expect = 6.7
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +1
Query: 487 ERRLSNSSDGSACSGYSKTSQLVLRRSY 570
E RLS +S GS SGYS++SQ+ R +Y
Sbjct: 397 ETRLSFTSVGSITSGYSQSSQVFGRSAY 424
>BC020238-1|AAH20238.1| 596|Homo sapiens SRP68 protein protein.
Length = 596
Score = 29.5 bits (63), Expect = 8.8
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 233 SLVACHRPLVKRLHTWCVDPAVIQVKIN 316
S V ++PLV+R T+C+DP+++ + N
Sbjct: 515 SQVKDNKPLVERFETFCLDPSLVTKQAN 542
>AK074698-1|BAC11145.1| 627|Homo sapiens protein ( Homo sapiens
cDNA FLJ90217 fis, clone MAMMA1002234, highly similar to
SIGNAL RECOGNITION PARTICLE 68 KD PROTEIN. ).
Length = 627
Score = 29.5 bits (63), Expect = 8.8
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 233 SLVACHRPLVKRLHTWCVDPAVIQVKIN 316
S V ++PLV+R T+C+DP+++ + N
Sbjct: 546 SQVKDNKPLVERFETFCLDPSLVTKQAN 573
>AK027322-1|BAB55041.1| 335|Homo sapiens protein ( Homo sapiens
cDNA FLJ14416 fis, clone HEMBA1005202, highly similar to
SIGNAL RECOGNITION PARTICLE 68 KD PROTEIN. ).
Length = 335
Score = 29.5 bits (63), Expect = 8.8
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 233 SLVACHRPLVKRLHTWCVDPAVIQVKIN 316
S V ++PLV+R T+C+DP+++ + N
Sbjct: 254 SQVKDNKPLVERFETFCLDPSLVTKQAN 281
>AF195951-1|AAF24308.1| 619|Homo sapiens signal recognition
particle 68 protein.
Length = 619
Score = 29.5 bits (63), Expect = 8.8
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 233 SLVACHRPLVKRLHTWCVDPAVIQVKIN 316
S V ++PLV+R T+C+DP+++ + N
Sbjct: 538 SQVKDNKPLVERFETFCLDPSLVTKQAN 565
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,221,991
Number of Sequences: 237096
Number of extensions: 1383598
Number of successful extensions: 2424
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2424
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5872755824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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