Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26o21
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U41268-1|AAA82433.2|  234|Caenorhabditis elegans Temporarily ass...    27   9.5  

>U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical
           protein F02E8.5 protein.
          Length = 578

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 191 VDNLVKSRSVLYTSRAHINVFIHKCFACNCII 96
           +DN+V     ++ S     +FIH CFA NC I
Sbjct: 6   IDNVVNWSRCVHPSCVAWVIFIHFCFAKNCSI 37


>U41268-1|AAA82433.2|  234|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 81 protein.
          Length = 234

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/65 (26%), Positives = 36/65 (55%)
 Frame = -2

Query: 365 HYREAKRDSIK*I*VVHLS*PELRRGQRTMYVIF*LEVDDMQRETTPEMLRRLRFFCCVD 186
           ++R+ +RD IK   +  ++ P+LRR + +  ++F       +RE+T + ++RL      D
Sbjct: 117 YFRKRERDIIKEEVLEKMTSPKLRRKEESNMMMF--TNSSKRRESTGDFMKRLTCDAIED 174

Query: 185 NLVKS 171
            L ++
Sbjct: 175 ELERN 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,868,038
Number of Sequences: 27780
Number of extensions: 217406
Number of successful extensions: 414
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)