Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26o18
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    61   1e-10
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    27   2.2  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    26   3.8  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    26   3.8  
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.1  
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    26   5.1  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.7  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    25   8.9  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    25   8.9  

>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
 Frame = +1

Query: 256 VTPFGRP-SDVLIEGQIKRVQCVLLARHGRKHQLQPSDVNYRANIWALKQVGCTHILATT 432
           +TP+G P S + I           LARHG  H   P++V  RANI ALK +G   I++ +
Sbjct: 33  ITPWGYPASPISIARTTSGFLIAFLARHGVGHIYTPTEVPSRANIAALKSLGVLAIVSFS 92

Query: 433 ATGSLVEEYRPGDLVILDDFIDRT-WGRKCTFYDN 534
           A GSL E+  P D V+    IDRT   R  TF+++
Sbjct: 93  AVGSLREDIPPEDFVLPTQIIDRTLCARPNTFFES 127


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +1

Query: 442 SLVEEYRPGDLVILDDF 492
           ++V  YRPGDL+++ D+
Sbjct: 210 NIVSNYRPGDLILIHDY 226


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = -2

Query: 512 RPQVLSMKSSNMTRSPGLYSSTRDPV--AVVASM*VQPTCFSAQILAR*FTSLG*S*CFL 339
           +P+ L M +       GL+ ST   +  A   S+ +     SA ILA    SLG   CFL
Sbjct: 70  KPRHLQMIAIGSCIGTGLFVSTGKSLKNAGPGSLMINFIILSAMILAL-ILSLGEMCCFL 128

Query: 338 PCRASRTHWT 309
           P ++S T +T
Sbjct: 129 PNQSSITMYT 138


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = +2

Query: 344 NINFNLAM*TIELIFGH*SKSAALTYSPRPPPGL*LKNTGLEIWSYWTISLI 499
           N++F +++   +L+F    +    T           KN  + IW+YW ++LI
Sbjct: 550 NVDFEVSVLASQLVFFVKHRDFKRTLITMKAISKLQKNFDVRIWNYWLVALI 601


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -3

Query: 475 PDLQACILQLETRWRSWRVCECSRLASVPKY*LDSSHR*VEVDVFCRV 332
           P L  C     T+ R   V  CSR A++P+   D+SH   E   FC V
Sbjct: 53  PCLHRCAFLDLTKSRGRVVHACSR-AALPRAIADASHCLEEKKFFCNV 99


>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 562 GTRRADPPPCCRKTCTSDPKSYQ*NRPI 479
           G   ++ PP CRKTC+S+ K Y    P+
Sbjct: 81  GHDNSNSPPKCRKTCSSN-KVYSNEVPL 107


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 204 TSDNSDLYFSYIAHIDGTIQHY 139
           TS  S +Y  Y  H+D  IQ+Y
Sbjct: 226 TSSTSMVYLLYSVHVDKIIQYY 247


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = -3

Query: 151 YSTLYTPIQELSYFS*ISNRLNYVFTFIIYLIKHRNFRIIK 29
           Y   YTPI  L       N    +     YL+ H  F I+K
Sbjct: 94  YDYYYTPIPSLKLKDSEENTCEMILHSSFYLLFHEPFNILK 134


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -3

Query: 85  YVFTFIIYLIKHRNFRIIKVKLFASKC 5
           +     +Y +KHR+F I++   F   C
Sbjct: 185 FYMVLAVYWVKHRDFPIVQCVFFTLHC 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,605,231
Number of Sequences: 5004
Number of extensions: 54356
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)