Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26o18
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0389 + 3067808-3069121 33 0.24
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 31 0.74
03_04_0135 + 17602684-17602986,17603831-17603854,17606801-17607196 30 1.3
06_03_1310 + 29238644-29240260 30 1.7
12_02_1271 + 27472457-27473030,27473122-27473197,27473277-274733... 29 2.3
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229 29 2.3
01_06_0690 + 31265682-31265834,31266045-31266273,31266989-31267395 29 3.0
10_02_0049 - 4580417-4580602,4580955-4581833 28 5.2
09_06_0282 - 22017474-22017484,22017681-22018473,22018918-22019094 28 5.2
08_01_0311 - 2753062-2753232,2753340-2753381,2754490-2754667,275... 28 5.2
08_01_0761 - 7296069-7296169,7296516-7296703,7297016-7297026,729... 28 6.9
11_06_0272 + 21806681-21806908,21806991-21807233,21807318-218074... 27 9.2
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 27 9.2
>12_01_0389 + 3067808-3069121
Length = 437
Score = 32.7 bits (71), Expect = 0.24
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Frame = -1
Query: 591 LTIRRPHGQVAHAARTPLRVVVKRALPTPSPINEIVQYDQISRPVFFN*RPGGGRGEYV- 415
LT+RR H+ TP V +R+ P+P P+ E+ D + R V GGG G +
Sbjct: 62 LTLRRLIHSWHHSTTTPFPV--ERSTPSPPPLREVDDDDVVERLVME--MEGGGGGSWCP 117
Query: 414 SAADLL-QCPNISSIVHIARLKLMFSAV 334
+ DLL + +++ +AR +++ + V
Sbjct: 118 PSCDLLREAAAVAAGSGVARRRMVGAGV 145
>01_05_0439 - 22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 31.1 bits (67), Expect = 0.74
Identities = 23/71 (32%), Positives = 34/71 (47%)
Frame = +1
Query: 370 NYRANIWALKQVGCTHILATTATGSLVEEYRPGDLVILDDFIDRTWGRKCTFYDNTEGGP 549
++ A +W+L + C +LA A L EY P D I+ D F++N EGG
Sbjct: 1096 DWTARVWSLTRGTCDAVLACHAGPILCVEYSPSDKGIITGSSDGL----IRFWEN-EGGI 1150
Query: 550 RGVCHLPMRPA 582
R V +L + A
Sbjct: 1151 RCVKNLTLHSA 1161
>03_04_0135 + 17602684-17602986,17603831-17603854,17606801-17607196
Length = 240
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 501 DLGSEVHVLRQHGGGSARRVPPAHAAGV 584
D G E HVL GGGS +PP+H+A +
Sbjct: 6 DDGGEAHVLTDGGGGSG-GLPPSHSASL 32
>06_03_1310 + 29238644-29240260
Length = 538
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = -1
Query: 609 QCGARPLTIRRPHGQ---VAHAARTPLRVVVKRALPTPSP 499
QC A P T RRP G+ H + P + +R PTP P
Sbjct: 361 QCQATPPTTRRPGGRTPLAPHRSPLPHHMPPRRTPPTPPP 400
>12_02_1271 +
27472457-27473030,27473122-27473197,27473277-27473392,
27473840-27474354
Length = 426
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -3
Query: 601 RAPSHNTPAAWAGGTRRADPPPC 533
R P TP W GGTR PC
Sbjct: 367 RGPDMLTPGGWCGGTRENGSDPC 389
>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
Length = 212
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 579 RPHGQVAHAARTPLRVVVKRALPTPSPINEIVQ 481
RP G++A AA +P R + + P PS + E+++
Sbjct: 177 RPGGRLAQAAASPFRCLYRPPPPRPSRLRELLR 209
>01_06_0690 + 31265682-31265834,31266045-31266273,31266989-31267395
Length = 262
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 539 RGVRAACATCPCGRRIVRGRAPHCTAR 619
R +RAA A C C RR G CT R
Sbjct: 73 RKMRAAGAVCSCARRAAAGDCRSCTLR 99
>10_02_0049 - 4580417-4580602,4580955-4581833
Length = 354
Score = 28.3 bits (60), Expect = 5.2
Identities = 36/110 (32%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Frame = -1
Query: 582 RRPHGQVAHAAR-TPLRVVVKRALPTPSPINEIVQYDQISRPVFFN*RPGGGRGEYV--- 415
RR HG+ A R L V+ + NEI + D I R +F + GG +
Sbjct: 251 RRMHGRTAGEPRKNDLLDVMLEEGESKEDSNEINR-DAI-RGLFTDLFTGGETTSHTMEC 308
Query: 414 SAADLLQCPNISSIVHIARLKLMFSAVSCQQNALDPFDLTLYQYVRGSPK 265
+ A+LLQCPN VH LK S + +Q +D D+T Y PK
Sbjct: 309 AMAELLQCPNSMRRVH--ELK---SVIGSKQQ-MDEHDITKLPYHHTRPK 352
>09_06_0282 - 22017474-22017484,22017681-22018473,22018918-22019094
Length = 326
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 478 ILDDFIDRTWGRKCTFYDNTEGGPRGVCHL 567
I D ++ TW RK T D+ EG R C L
Sbjct: 195 ISDGWVAATWSRKITLEDSWEGDWRKDCEL 224
>08_01_0311 -
2753062-2753232,2753340-2753381,2754490-2754667,
2755021-2755118,2755964-2756098,2756280-2756444,
2756529-2756693,2757082-2757299,2758508-2758811
Length = 491
Score = 28.3 bits (60), Expect = 5.2
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = -3
Query: 589 HNTPAAWAGGTRRADPPPCCRKTCTSD--PKSYQ*NRPI*PDLQACILQLETR--WRSW 425
HN A AG RA+PP R TC +D P+S Q + DL Q+ TR W S+
Sbjct: 30 HNL-AHLAGEVGRAEPPVRLRVTCLADPHPESLQLGLQLAADLALPAPQVYTRTPWPSY 87
>08_01_0761 -
7296069-7296169,7296516-7296703,7297016-7297026,
7297521-7297811,7298623-7298665,7309343-7309632,
7309719-7310603
Length = 602
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 619 PRCTVRRAPSHNTPAAWAGGTRRADPPP 536
P T RR+P +T G T R+DP P
Sbjct: 304 PPITQRRSPRQHTVQGGGGPTNRSDPQP 331
>11_06_0272 +
21806681-21806908,21806991-21807233,21807318-21807444,
21807822-21808036
Length = 270
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -3
Query: 616 RCTVRRAPSHNTPAAWAGGTRRA 548
R VRRA S N WAGG R+A
Sbjct: 16 RPLVRRAGSRNGKLWWAGGVRKA 38
>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = -2
Query: 560 HTPRGPPSVLS*NVHFRPQVLS----MKSSNMTRSPGLYSSTRDPVAVV 426
H RGPP ++ ++F PQ ++ + SS+ + SP L+ S D VV
Sbjct: 2662 HPRRGPPIPIAHPLYFAPQSITVTSVVPSSSSSSSPVLFVSLLDSNIVV 2710
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,043,054
Number of Sequences: 37544
Number of extensions: 404163
Number of successful extensions: 1227
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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