Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26o18
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23168-10|AAC38810.2|  288|Caenorhabditis elegans Hypothetical p...   141   3e-34
Z92782-1|CAB07184.1|  349|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>U23168-10|AAC38810.2|  288|Caenorhabditis elegans Hypothetical
           protein B0228.7 protein.
          Length = 288

 Score =  141 bits (342), Expect = 3e-34
 Identities = 65/137 (47%), Positives = 87/137 (63%)
 Frame = +1

Query: 214 DDPTLFENQIEKKVVTPFGRPSDVLIEGQIKRVQCVLLARHGRKHQLQPSDVNYRANIWA 393
           +DP +  + +   V TP+G+PSD ++EG I  V+CVLLARHGRKH + P +VN+RAN+WA
Sbjct: 13  EDPNILLDPVTVAVDTPYGKPSDDVVEGTINGVECVLLARHGRKHDIMPGNVNFRANLWA 72

Query: 394 LKQVGCTHILATTATGSLVEEYRPGDLVILDDFIDRTWGRKCTFYDNTEGGPRGVCHLPM 573
           L   G   I+A+TA GSL E   PG L+  D   DRT GR+ TF+D +     GVCH+  
Sbjct: 73  LYSRGVDVIIASTACGSLQENVEPGHLLFPDSVFDRTTGRQSTFFDGSYDQAPGVCHIQA 132

Query: 574 RPAYCERARAALYSAAK 624
            P Y E+ R  L S A+
Sbjct: 133 HPTYNEKLRQVLISTAE 149


>Z92782-1|CAB07184.1|  349|Caenorhabditis elegans Hypothetical
           protein F14F8.1 protein.
          Length = 349

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -3

Query: 373 SSHR*VEVDVFCRVVPAERIGPV*FDPLSVRPRVSQTV*PPFFRFD 236
           ++H+ +E   F  ++ A+ +GP  F  L V P ++  + PPFF F+
Sbjct: 233 AAHQELEAQFFKALI-AQSLGPTIFLVLPVAPILASPLIPPFFGFN 277


>Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical
           protein F59F3.5 protein.
          Length = 1199

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 235 NQIEKKVVTPFGRPSDVLIEGQIKRVQCVL 324
           ++IEK V      PSD++ EG   R+ CV+
Sbjct: 575 HEIEKSVNATKTEPSDIIFEGDNVRLTCVV 604


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,781,709
Number of Sequences: 27780
Number of extensions: 322296
Number of successful extensions: 720
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)