Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26o18
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   3.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.4  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   9.8  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 394 LKQVGCTHILATTATGSLV 450
           LKQV   H +ATT  G LV
Sbjct: 170 LKQVEIPHDVATTGKGELV 188


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +1

Query: 307 RVQCVLLARHGRKHQLQPSDVNYRANI 387
           R+ CV+ +RH      +  +V  R N+
Sbjct: 220 RISCVIASRHRNLEATESENVRPRRNV 246


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 598 APSHNTPAAWAGGTRRADPPP 536
           A + N  A +  G+RR  PPP
Sbjct: 398 ATARNVVAPFLIGSRRTSPPP 418


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 448 VEEYRPGDLVILDD 489
           +EEY PG+ VI+ D
Sbjct: 416 IEEYLPGNGVIIPD 429


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 153 FRRYGRCKKNKDRNYRR 203
           + R  RC ++++R YR+
Sbjct: 231 YSRERRCSRDRNREYRK 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,972
Number of Sequences: 438
Number of extensions: 4381
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)