Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26o15
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    29   0.45 
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    29   0.79 
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    27   3.2  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   4.2  
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc...    25   7.4  

>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 179 NARWIHADKYFDTAAQLYSYIVQNKVSDVH 268
           + +W H  +YF  A + Y Y+  N  +++H
Sbjct: 147 DVKWFHNHQYFAVAQKKYVYVYDNMGTEIH 176


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 335 DEHDLMLKIYIGATAFLLFYTEENVSR 415
           DE+D +LK+Y G T+F L   E+++ R
Sbjct: 245 DEYDHLLKVYSGQTSFSLEEIEKDLGR 271


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 46  PKINTIEVEFKGQHVIVQLYTEARRHDVGRDCVQ 147
           P++ TIE  F   H +V+LY   +   +GRD  Q
Sbjct: 694 PQLFTIEEAFTTVHHLVRLYKVKKPDTLGRDLKQ 727


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 633 ASKFESCICGMYKRTASLTQCAKL 562
           +S  E+C+  MYK + S+ QC  L
Sbjct: 621 SSLLEACMGNMYKNSGSVFQCGSL 644


>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
           Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 462 PTSLKSRPLKMFACIGTRPSKNLQSWIVIAFSRAVL 569
           P  + S P+    C    P  + QSW+   +S AVL
Sbjct: 177 PQQIHSTPVSSNECKKNEPFNSKQSWVKSRWSIAVL 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,740,707
Number of Sequences: 5004
Number of extensions: 54630
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)