Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26o15
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0566 + 4466318-4466695,4466736-4466909,4466941-4467038,446...    30   1.4  
09_01_0136 - 2030523-2031062,2032349-2032534,2032642-2032796,203...    29   2.5  
03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561     29   3.3  
09_02_0512 + 10101274-10102248,10102363-10102748,10103807-10104503     28   7.6  

>11_01_0566 +
           4466318-4466695,4466736-4466909,4466941-4467038,
           4467211-4467346
          Length = 261

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 192 FTPTNIL-IPPHNCIVTLCKTKCPTCTSNRWTT 287
           F+P  I  + P   +VT C  KCP C S  W T
Sbjct: 156 FSPWLIAEMDPMMLMVTKCSMKCPECDSKGWAT 188


>09_01_0136 -
           2030523-2031062,2032349-2032534,2032642-2032796,
           2032917-2033079
          Length = 347

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +2

Query: 173 TVNARWIHADKYFDTAAQLY-----SYIVQNKVSDVHVKPLDDGGGR 298
           TVNA   H  KY   +A+ Y     +Y+    V++ HV+  D GG R
Sbjct: 209 TVNASTEHVMKYLTGSAKTYVNAAQAYVHVRDVAEAHVRVYDCGGAR 255


>03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561
          Length = 827

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 353 LKIYIGATAFLLFYTEENVSRVMYTGNRG 439
           L IY  A AF ++YT      V++T NRG
Sbjct: 54  LTIYSNAFAFSIWYTNSKNKTVVWTANRG 82


>09_02_0512 + 10101274-10102248,10102363-10102748,10103807-10104503
          Length = 685

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 588 PYVCTFRICKIQTWTRSRCSIGRTW 662
           PY  T  + K     R+ CSIGR W
Sbjct: 55  PYAHTIELTKTDISDRNLCSIGRVW 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,120,714
Number of Sequences: 37544
Number of extensions: 365294
Number of successful extensions: 913
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)