Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26o12
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    28   0.82 
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   2.5  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    26   3.3  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    25   7.6  

>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 27.9 bits (59), Expect = 0.82
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +3

Query: 30  LRSIIQRM*EYNNRISSPQ*KHEATTTSAFFLSKETSILNPH 155
           L  I Q +  +N R+++PQ K   +TTS   +S ETS + P+
Sbjct: 67  LEGIAQALNVFNRRMATPQYKLLPSTTS-LTISPETSEIRPY 107


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 22  LQIYGVLFNVCKNIITESVRHNRNMKQLQHLRSSCPKK 135
           LQ++  +  +CK+   E    N++M QL HL  +  K+
Sbjct: 320 LQLFSKVVQLCKSEDIEGSILNKDMTQLHHLLENLSKE 357


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +1

Query: 10  NATSLQIYGVLFNVCKNIITESVRHNRNMKQLQH 111
           N +  ++Y  +FN+C  + T   + N ++ +  H
Sbjct: 499 NLSESEVYNTVFNLCDELYTTPCKKNMSVLETLH 532


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 290 TITLNTRGFVFIKF*LPTFQKRNGFVS 370
           TITL+  G+VF  F L T +K + F++
Sbjct: 33  TITLSFEGYVFHHFRLITVEKIDVFIN 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,762,354
Number of Sequences: 5004
Number of extensions: 33729
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)