Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26o12
         (469 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0672 - 5485017-5485111,5485187-5485408,5488704-5488893,548...    30   1.1  
09_06_0365 - 22582467-22583524,22584407-22584641,22585474-225856...    27   10.0 
04_04_1218 - 31822915-31823141,31823418-31823832,31824090-318244...    27   10.0 
04_04_1079 - 30663919-30665044,30665143-30665298,30665405-306655...    27   10.0 

>11_01_0672 -
           5485017-5485111,5485187-5485408,5488704-5488893,
           5488974-5489078,5489291-5489569,5489979-5490227
          Length = 379

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 86  IET*SNYNICVLLVQRNKHIKSALIHQNEAEK 181
           IET  NYN+ V  V  +KH+K   +H  E ++
Sbjct: 217 IETEENYNVLVKPVVTSKHLKVVKVHCTEVDE 248


>09_06_0365 -
           22582467-22583524,22584407-22584641,22585474-22585684,
           22585775-22585848,22585943-22586092
          Length = 575

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 122 LVQRNKHIKSALIHQNEAEKVSEESFCLSFL 214
           +V+R+ H++ A  HQ+ AEK+  +   L ++
Sbjct: 416 MVRRHNHLRIAQFHQHLAEKLDLDMSALQYM 446


>04_04_1218 - 31822915-31823141,31823418-31823832,31824090-31824440,
            31825391-31825549,31825965-31826093,31826257-31826460,
            31827200-31827412,31827547-31830912,31830999-31831150,
            31831912-31832407,31832646-31833456,31833537-31834728,
            31834856-31834922
          Length = 2593

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 146  KSALIHQNEAEKVSEESFCLSFL 214
            K   +H+NEAE + EE  C S L
Sbjct: 2534 KDPAMHRNEAEHLEEEQACQSLL 2556


>04_04_1079 -
           30663919-30665044,30665143-30665298,30665405-30665563,
           30665640-30665770,30666230-30666315,30666607-30666673,
           30666944-30667023,30667173-30667260,30667380-30667428,
           30667516-30667608,30667725-30667808,30667986-30668044,
           30668293-30668327,30668416-30668718,30669111-30669275,
           30669701-30669780,30670932-30671003,30671143-30671234,
           30671359-30671433,30671552-30671688,30671763-30671890,
           30671942-30672033,30672473-30672808
          Length = 1230

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 143 IKSALIHQNEAEKVSEESFCLSFLFCCIYY 232
           + S ++H  + +  ++E FC  F  CC+Y+
Sbjct: 717 VDSNMVHHYKKKYCADERFCF-FQGCCVYF 745


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,925,910
Number of Sequences: 37544
Number of extensions: 168793
Number of successful extensions: 316
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)