Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26o12
         (469 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          27   0.13 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      27   0.13 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   5.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   6.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.7  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 26.6 bits (56), Expect = 0.13
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 116 VLLVQRNKHIKSALIHQNEAEKVS 187
           +LLV  N H+K  L+H  E E+++
Sbjct: 657 LLLVLSNIHVKEVLVHHREMEELN 680


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 26.6 bits (56), Expect = 0.13
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 116 VLLVQRNKHIKSALIHQNEAEKVS 187
           +LLV  N H+K  L+H  E E+++
Sbjct: 657 LLLVLSNIHVKEVLVHHREMEELN 680


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 104 YNICVLLVQRNKHIKSALIH 163
           ++ICV +V  N H +S   H
Sbjct: 316 FSICVTVVVLNVHFRSPQTH 335


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = +2

Query: 134 NKHIKSALIHQNEAEKVSEESFCLSFLFCCIYYN 235
           N + +  ++H + +E   +  F L F    + YN
Sbjct: 203 NNNTEWEIVHMSHSESTIDSKFGLGFTTDLLSYN 236


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 327 NFNYPPSRNEMALLADQLKY 386
           +F+  PS+N  + + DQ+ Y
Sbjct: 630 HFHQSPSQNHSSAVPDQMPY 649


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 107 NICVLLVQRNKHIKSALIHQ 166
           +ICV +V  N H +S   H+
Sbjct: 321 SICVTVVVLNVHFRSPQTHK 340


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 107 NICVLLVQRNKHIKSALIHQ 166
           +ICV +V  N H +S   H+
Sbjct: 321 SICVTVVVLNVHFRSPQTHK 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,101
Number of Sequences: 438
Number of extensions: 2476
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)