Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26o11
(335 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 30 0.11
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 29 0.14
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 27 0.58
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 1.0
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 1.0
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 1.0
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 1.0
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 1.0
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 1.0
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 1.0
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 1.0
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 1.0
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 1.0
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 1.0
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 26 1.8
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 26 1.8
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi... 25 4.1
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 24 5.4
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 24 5.4
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 23 9.4
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 23 9.4
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 23 9.4
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 23 9.4
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 23 9.4
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 23 9.4
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 29.9 bits (64), Expect = 0.11
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +2
Query: 5 DFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTLHR 184
D SL + V N+ +ND+I N+ + +LS D + TFT+++
Sbjct: 198 DDSLDILNVPNL-VNDDIANNNAAPPPPLAQAQEQLSTENEDEFDIDDTTDKMTTFTMNK 256
Query: 185 FVDDNVLTQDE 217
F D +VL +D+
Sbjct: 257 FADLSVLEEDD 267
Score = 26.2 bits (55), Expect = 1.3
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 20 LKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSV 166
L R+ +F+ND + + +K + S R+ V L+HAL N++++
Sbjct: 520 LTRIDKIFINDVYQRMQQFKHSAIEEISLPPCRKYVRRLVHALANDLNL 568
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 29.5 bits (63), Expect = 0.14
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = +2
Query: 62 NDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDELSFLANFL 241
+D++ +T D N+ ++ + F I ALL + ++F+DDN T S + F
Sbjct: 308 SDRLDAASQTTDFVNQWTKESLFFQICALLTTALIL--ANKFLDDNTFTNQSWSQVTGFR 365
Query: 242 VTKLDEAYQ 268
L+ Q
Sbjct: 366 TALLNSFEQ 374
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 27.5 bits (58), Expect = 0.58
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 255 SSFVTRKFAKKLSSSCVKTLSSTNLCNVNVTLT 157
SSF+ RKF LSSS ++ L++ N++ T
Sbjct: 858 SSFINRKFGVLLSSSFIQQLNTVENLNLSFNST 890
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.0
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 249 NWTKHTNCRRIN-SKINKNENKFVQYTKKK 335
N T N R+ N S+I + NKF+ +T+K+
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRKR 250
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.0
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 249 NWTKHTNCRRIN-SKINKNENKFVQYTKKK 335
N T N R+ N S+I + NKF+ +T+K+
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRKR 250
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.0
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 249 NWTKHTNCRRIN-SKINKNENKFVQYTKKK 335
N T N R+ N S+I + NKF+ +T+K+
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRKR 250
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.0
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 249 NWTKHTNCRRIN-SKINKNENKFVQYTKKK 335
N T N R+ N S+I + NKF+ +T+K+
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRKR 250
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.0
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 249 NWTKHTNCRRIN-SKINKNENKFVQYTKKK 335
N T N R+ N S+I + NKF+ +T+K+
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRKR 250
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.0
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 249 NWTKHTNCRRIN-SKINKNENKFVQYTKKK 335
N T N R+ N S+I + NKF+ +T+K+
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRKR 250
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.0
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 249 NWTKHTNCRRIN-SKINKNENKFVQYTKKK 335
N T N R+ N S+I + NKF+ +T+K+
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRKR 250
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.0
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 249 NWTKHTNCRRIN-SKINKNENKFVQYTKKK 335
N T N R+ N S+I + NKF+ +T+K+
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRKR 250
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.0
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 249 NWTKHTNCRRIN-SKINKNENKFVQYTKKK 335
N T N R+ N S+I + NKF+ +T+K+
Sbjct: 221 NTTNSRNLRKTNISRIEYSSNKFLNHTRKR 250
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.0
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 249 NWTKHTNCRRIN-SKINKNENKFVQYTKKK 335
N T N R+ N S+I + NKF+ +T+K+
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRKR 250
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.0
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 249 NWTKHTNCRRIN-SKINKNENKFVQYTKKK 335
N T N R+ N S+I + NKF+ +T+K+
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRKR 250
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 25.8 bits (54), Expect = 1.8
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -3
Query: 273 GNWYASSSFVTRKFAKKLSSSCVKTLSST 187
G WY+ S T K+L SC L ST
Sbjct: 665 GWWYSVESSSTAYLLKQLEKSCTLALKST 693
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 25.8 bits (54), Expect = 1.8
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Frame = +2
Query: 50 DEIENDKIYKLVETVD------SSNKLSRRQVDFLIHAL 148
+EIEN+ + K VET+D + K+S++ V FL H +
Sbjct: 164 EEIENELLTKGVETIDFEHATTTKPKVSKQVVAFLQHGI 202
>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 615
Score = 24.6 bits (51), Expect = 4.1
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +3
Query: 279 INSKINKNENKFVQYTK 329
INS KN++K++++TK
Sbjct: 584 INSDFTKNKDKYIKFTK 600
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 24.2 bits (50), Expect = 5.4
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -1
Query: 80 VCRFCHFQFHRLKTC*LL 27
VCR CH H TC L+
Sbjct: 150 VCRTCHTDTHTSSTCPLI 167
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 24.2 bits (50), Expect = 5.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 273 GNWYASSSFVTRKFAKKLSSSCVKTLSST 187
G WY+ S T K+ +C + LSS+
Sbjct: 1555 GWWYSVESSATPHLLKQFEQACQQALSSS 1583
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 23.4 bits (48), Expect = 9.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 273 GNWYASSSFVTRKFAKKLSSSCVKTLSST 187
G WY+ S T ++ +C K LSS+
Sbjct: 1551 GWWYSVESNATSHVLQQFEEACRKALSSS 1579
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 23.4 bits (48), Expect = 9.4
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 182 RFVDDNVLTQDELS 223
RFV+DN L+ +ELS
Sbjct: 480 RFVEDNTLSPEELS 493
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 23.4 bits (48), Expect = 9.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 101 SNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDNVL 205
SNKL R+Q+ +H + N + F LH DD ++
Sbjct: 712 SNKL-RKQI---LHLVEQNCLLIFDLHNGTDDTIV 742
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 23.4 bits (48), Expect = 9.4
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -1
Query: 335 FFFCILHKFIFIFIYLTINT 276
F F LH F+F+F + +++
Sbjct: 35 FIFATLHAFVFLFSHTLVSS 54
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 23.4 bits (48), Expect = 9.4
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +2
Query: 11 SLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTF---TLH 181
+LKL R + +E K + + + + + + + +V VT TL
Sbjct: 230 TLKLARDFPNEIRSYLEASKNFNIFKEKEILRNICLDECYLKAYFSAEDVKVTTPFETLQ 289
Query: 182 RFVDDNVLTQDELSFLA 232
+F DN+L Q +LSF +
Sbjct: 290 QFDGDNILQQWKLSFFS 306
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 23.4 bits (48), Expect = 9.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 5 DFSLKLKRVINMFLNDEIENDKIYKLVETVDSS 103
DF K + + LN E + K++ET+D++
Sbjct: 536 DFEPLAKHQVMLLLNMEAYEQALKKVIETMDNN 568
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,169,154
Number of Sequences: 5004
Number of extensions: 19396
Number of successful extensions: 90
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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