Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26o09
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 185 6e-48
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 52 1e-07
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 42 8e-05
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.1
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 5.7
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 5.7
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 7.6
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 7.6
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 25 10.0
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 25 10.0
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 185 bits (450), Expect = 6e-48
Identities = 91/163 (55%), Positives = 111/163 (68%), Gaps = 1/163 (0%)
Frame = +3
Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
NPLF RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L RLKVPP I QF +TLD
Sbjct: 24 NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83
Query: 369 KTTAKGLFKILEKYRPET-XXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLV 545
K TA +FK+L KYRPET +P ++ G N V L+
Sbjct: 84 KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALI 143
Query: 546 EKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 674
E KKA+LV+IA DVDPIELV+FLPALC+KMGVPY IVK K+RL
Sbjct: 144 EAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARL 186
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 51.6 bits (118), Expect = 1e-07
Identities = 22/55 (40%), Positives = 33/55 (60%)
Frame = +3
Query: 510 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 674
+R G N TK + + ++ +V+A D +PIE++L LP LC VPY V K+ L
Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAAL 86
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 41.9 bits (94), Expect = 8e-05
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +3
Query: 510 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 674
I G V K V K + LV++A D+ P++++ +P LC VPY K L
Sbjct: 54 ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELL 108
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 224 YWSGHSANS*LVQICKMAQVYPHPASEGCTSASSESAPSDQPIYPDTGQDYS 379
Y+ + N + Q+ A YP+ +S SAS S+P+ P T + S
Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTRSAFRPKTSETVS 347
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 303 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 404
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 5.7
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -2
Query: 531 LCLCRIGWC 505
LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 485 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 315
L F L +S Q FP FS L+NL + ++ Q L + R +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 513 RSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKM 635
+SG+ +T+ + +V I + +D +E LP LC K+
Sbjct: 378 KSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKV 418
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 10.0
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Frame = -3
Query: 404 LQNLEKALSCSLVQCLGKLVDRRGHFQTTLKYS----LLTLDADILGPS-YKSGQVTSWL 240
L+N ++ L +L + L +V++ H TTL Y+ LL + + + S K T+++
Sbjct: 1690 LKNSKQELLAALRKLLSTMVEQNDHTCTTLIYTLFEHLLNIYKETINDSDKKEKNETAFM 1749
Query: 239 NALTNSKVLWPLLEER---IHNFL 177
+ + + P+L+ +H+FL
Sbjct: 1750 SMVLVLTLAAPILDSEQLVVHDFL 1773
>SPAC1851.03 |ckb1||CK2 family regulatory subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.0 bits (52), Expect = 10.0
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +3
Query: 375 TAKGLFKILEKYR 413
TA+GL+K+LEKY+
Sbjct: 94 TAQGLYKMLEKYK 106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,446
Number of Sequences: 5004
Number of extensions: 40768
Number of successful extensions: 130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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