Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26o08
(507 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal pro... 244 4e-65
AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal pro... 135 2e-32
U41028-4|AAA82357.1| 455|Caenorhabditis elegans Hypothetical pr... 29 2.6
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ... 29 2.6
Z81041-7|CAE17709.1| 95|Caenorhabditis elegans Hypothetical pr... 28 3.4
AL132948-36|CAD57707.2| 186|Caenorhabditis elegans Hypothetical... 28 4.5
AF324054-1|AAK01415.1| 162|Caenorhabditis elegans Ly-6-related ... 27 5.9
>AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform a protein.
Length = 187
Score = 244 bits (596), Expect = 4e-65
Identities = 113/155 (72%), Positives = 130/155 (83%)
Frame = +3
Query: 42 YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 221
YSR P+N KSCKARGS+LRVHFKNT+E AMA+R MPLRRA +L +V E KE +PFRRF
Sbjct: 6 YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65
Query: 222 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAP 401
+GG+GR AQ KQ+ TTQGRWP KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA
Sbjct: 66 HGGIGRAAQTKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 125
Query: 402 CLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVA 506
LRRRTYRAHGRINPYMSSPCHIEV L+E+ED V+
Sbjct: 126 KLRRRTYRAHGRINPYMSSPCHIEVILAEKEDVVS 160
>AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform b protein.
Length = 159
Score = 135 bits (327), Expect = 2e-32
Identities = 81/155 (52%), Positives = 95/155 (61%)
Frame = +3
Query: 42 YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 221
YSR P+N KSCKARGS+LRVHFKNT+E A M LR +P RR
Sbjct: 6 YSRAPENSTKSCKARGSDLRVHFKNTHEAA-----MALRG--------------MPLRRA 46
Query: 222 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAP 401
+ + K+ + L LL+NAESNA+ K LDVD LVI+HI V RA
Sbjct: 47 QAFLNHVKEHKEIVPFRR---------FLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 97
Query: 402 CLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVA 506
LRRRTYRAHGRINPYMSSPCHIEV L+E+ED V+
Sbjct: 98 KLRRRTYRAHGRINPYMSSPCHIEVILAEKEDVVS 132
>U41028-4|AAA82357.1| 455|Caenorhabditis elegans Hypothetical
protein C25G6.5 protein.
Length = 455
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 227 AVEATEWNTLFLFN--HVFEVTNSTTERHLSDCHCGLICVLKVN 102
AV A W L +F+ + FE+ NS + S CHC +C +N
Sbjct: 278 AVFAVAWLPLNVFHIFNTFELVNSFSVTTFSICHCLAMCSACLN 321
>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
protein Y46B2A.2 protein.
Length = 1365
Score = 28.7 bits (61), Expect = 2.6
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +3
Query: 279 WPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHI-QVNRAPCLRR-----RTYRAHGRI 440
W K+ + LL AE++ + D+D++V I + P L R +R +G
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547
Query: 441 NPYMSSPCHIEVCLSER 491
NP+ SPC ++ S+R
Sbjct: 548 NPH--SPCMVDGHCSKR 562
>Z81041-7|CAE17709.1| 95|Caenorhabditis elegans Hypothetical
protein C27A7.9 protein.
Length = 95
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/43 (27%), Positives = 17/43 (39%)
Frame = -1
Query: 468 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LACQRPKFCC 340
CG +T R C + +C G +L C + K CC
Sbjct: 40 CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81
>AL132948-36|CAD57707.2| 186|Caenorhabditis elegans Hypothetical
protein Y39B6A.48 protein.
Length = 186
Score = 27.9 bits (59), Expect = 4.5
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Frame = -2
Query: 305 EEFGGFLGPATLCCAKLLCLSTATNAAVEATEW-NTLFLFNHVF--EVTNSTTERHLSDC 135
E FG G ++ C S + + + ++ T +++ VF + +ER +
Sbjct: 30 ESFGRSSGAGAPIPRQVECYSCMSLSYQTSWKYLQTTYIYPKVFTDRCRDPNSERGMPTV 89
Query: 134 HCGLICVLKVNTEV*TTSFAGFRRVIR-LPRVTTH 33
CG +CV + +V F GF+ + L RV H
Sbjct: 90 MCGSVCVSLMEPDVEAGVFIGFKHIRGCLDRVLRH 124
>AF324054-1|AAK01415.1| 162|Caenorhabditis elegans Ly-6-related
protein HOT-2 protein.
Length = 162
Score = 27.5 bits (58), Expect = 5.9
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Frame = -2
Query: 215 TEWN---TLFLFNHVF--EVTNSTTERHLSDCHCGLICVLKVNTEV*TTSFAGFRRVIR- 54
T W T +++ VF + +ER + CG +CV + +V F GF+ +
Sbjct: 21 TSWKYLQTTYIYPKVFTDRCRDPNSERGMPTVMCGSVCVSLMEPDVEAGVFIGFKHIRGC 80
Query: 53 LPRVTTH 33
L RV H
Sbjct: 81 LDRVLRH 87
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,119,584
Number of Sequences: 27780
Number of extensions: 249875
Number of successful extensions: 682
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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