Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26o04
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    28   0.37 
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    28   0.49 
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|...    25   2.6  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    25   2.6  
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet...    25   3.4  
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    25   4.5  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    24   6.0  

>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 28.3 bits (60), Expect = 0.37
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 183 YANLEMQIEEEIKYMEIDDGEEIDXVKTFLRNSMSTA 293
           YA   ++ EE +K  +I DG  I  VKT  +N  + A
Sbjct: 48  YAGRVLKDEESLKTYKIQDGHSIHLVKTLGQNPAAAA 84


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 27.9 bits (59), Expect = 0.49
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +2

Query: 32  NDIYMQQLFNIHIKKCQDDRTHSNSLAFIVG*CIIKNWRGRPTTKLLFARIRK 190
           N+ ++ +LF+I++ + +DD+   + + FI   C I       +   LFA   K
Sbjct: 345 NEKFLHELFSIYVNEGEDDQRKQDGIFFIQQVCNIAKGLQFQSCSALFATFVK 397


>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 401

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 216 FLPQFAFPSLRILANNNLVVGRPRQF 139
           FL   +FP++ +      V+ RP QF
Sbjct: 262 FLKYVSFPAMELRGETEFVIDRPEQF 287


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 13/58 (22%), Positives = 27/58 (46%)
 Frame = +3

Query: 90  ERTVTRWHLLSDNVLLKIGEVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEEIDXVK 263
           E ++  W    D  + K+ +   RLN +  EY   E Q+  E+    +D+   ++ ++
Sbjct: 272 EESLKVWARFRDLSITKLKDTYDRLNIHYDEYDG-ESQVSLELMNKMVDELRSLNLIE 328


>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
           acetyltransferase subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 351 KXYLLNCLILMLTRTNHAVPPWT 283
           K Y  N L+ ++ R    VPPWT
Sbjct: 335 KNYTPNALVDLIARILALVPPWT 357


>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 153 AQRLNYYLQEYANLEMQIEEEIKYMEIDDGEEI 251
           A+ LN YL+ YA L  ++ +  K++     EE+
Sbjct: 105 ARFLNEYLEYYARLLAEVVDATKFLPFQLTEEV 137


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 14/68 (20%), Positives = 32/68 (47%)
 Frame = -2

Query: 204 FAFPSLRILANNNLVVGRPRQFLIIHYPTINANELLCVLSSWHFLM*ILKSCCIYISLNV 25
           F F +  ++ +NNL   +   F  ++   +N+  +   L+ ++ +  I+ +  +Y+  N 
Sbjct: 333 FTFAAFTLMLSNNLAYQQNLIFTSLNVSDLNSTLVGVALAGYNTVSAIIATFAMYLIPNQ 392

Query: 24  XVYFHVSF 1
             Y H  F
Sbjct: 393 SAY-HAMF 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,275,197
Number of Sequences: 5004
Number of extensions: 22495
Number of successful extensions: 80
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)