Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26o04
(352 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1571 - 27935756-27935950,27936048-27936199,27936294-279364... 29 1.4
04_04_0447 - 25297351-25297575,25297663-25298370,25298824-252991... 27 5.5
02_05_0566 - 30017031-30017309,30018077-30018172,30018261-300183... 27 5.5
11_06_0235 + 21588212-21589029,21589426-21591358 26 7.2
09_04_0272 - 16278136-16278289,16278873-16278970,16279090-162792... 26 7.2
01_06_0564 - 30271749-30271759,30271847-30271922,30272878-302729... 26 7.2
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343... 26 9.6
06_01_0668 - 4882174-4884204 26 9.6
03_02_0879 + 12097602-12098120,12099215-12099254,12099550-120996... 26 9.6
01_01_0433 + 3282195-3285185 26 9.6
>08_02_1571 -
27935756-27935950,27936048-27936199,27936294-27936403,
27936845-27937050,27937212-27937295,27937367-27937525,
27937621-27937728,27938103-27938278,27938376-27938462,
27938546-27938657,27938737-27938817,27938890-27938943,
27939107-27939183,27939262-27939331,27939552-27939666,
27939840-27939937,27940041-27940179,27940267-27940868,
27941270-27941399,27941471-27941529
Length = 937
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 207 EEEIKYMEIDDGEEIDXVKTFLRNSMSTAEQRDLYALAL 323
+ E+ + G++ID V TF + TA+QRDLY A+
Sbjct: 41 QREVAVTQTIAGKQIDRVFTFDKVFGPTAKQRDLYDQAI 79
>04_04_0447 -
25297351-25297575,25297663-25298370,25298824-25299123,
25299876-25299927,25300530-25300673,25301002-25301258,
25301533-25301739,25301819-25301992,25302409-25302432,
25302610-25302677,25304607-25304665,25304802-25304877,
25304965-25305070,25305268-25305377,25305831-25305995,
25306571-25306656,25306893-25306957,25307280-25307330,
25309009-25309056,25309677-25309796,25310226-25310301,
25310780-25310877,25312149-25312404,25313117-25313238
Length = 1198
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 87 IERTVTRWHLLSDNVLLKIGEVAQRLNYYLQEYANL 194
+E +TR+H DN K+ E+ + L+ LQ+ N+
Sbjct: 717 VENALTRYHEACDNAKRKVLELLRGLSSELQDKINV 752
>02_05_0566 -
30017031-30017309,30018077-30018172,30018261-30018377,
30018538-30018667,30018866-30019029,30019480-30019485
Length = 263
Score = 26.6 bits (56), Expect = 5.5
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Frame = +3
Query: 78 ARMIERTVTRWHLLSDNVLLK-------IGEVAQRLNYYLQEYANLEMQIEEE 215
+R+ + + RW + DN L+K G+V Q ++ LQ + EM++E E
Sbjct: 206 SRVGDMQIGRWFMTKDNALVKDSTVNVVSGKVKQEVHLKLQNVESGEMELELE 258
>11_06_0235 + 21588212-21589029,21589426-21591358
Length = 916
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 141 IGEVAQRLNYYLQEYANLEMQIEEEIKYMEID 236
IG + +L L E NL+ ++E IK+++I+
Sbjct: 8 IGTLLPKLGKLLSEEYNLQKNVKEGIKFLKIE 39
>09_04_0272 -
16278136-16278289,16278873-16278970,16279090-16279230,
16279701-16279865,16279941-16280117,16280330-16280510,
16280784-16280829,16281178-16281241,16281331-16281353,
16281964-16282036,16282410-16282541,16283343-16283429,
16283488-16283700
Length = 517
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 107 LAFIVG*CIIKNWRGRPTTKLLFARIRKL 193
+A + G C++ W+G PTT L+ + K+
Sbjct: 203 IALVCGNCVV--WKGAPTTPLITIAMTKI 229
>01_06_0564 -
30271749-30271759,30271847-30271922,30272878-30272919,
30273065-30273206,30273278-30273339,30273460-30273526,
30273644-30273834
Length = 196
Score = 26.2 bits (55), Expect = 7.2
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = +3
Query: 147 EVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEE 248
++ Q L++ ++ +E+++++M +DDGEE
Sbjct: 83 DIRQERRAELEKVGSMCDLLEKQLRFMTVDDGEE 116
>10_08_0451 +
18033065-18033253,18033746-18033805,18034256-18034324,
18034751-18034786,18035081-18035146,18035345-18035443,
18035543-18035620,18035724-18035802,18035999-18036093,
18036251-18036335,18036505-18036698,18036804-18036922,
18037015-18037057
Length = 403
Score = 25.8 bits (54), Expect = 9.6
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +3
Query: 99 VTRWHLLSDNVLLKIGEVAQRLNYYLQEYANLEMQIEEEI 218
+ R + LSD V++ G + YY++ + N +++IEE++
Sbjct: 122 IVRENELSDKVIVLHGRIEY---YYIRIFENQDVEIEEKV 158
>06_01_0668 - 4882174-4884204
Length = 676
Score = 25.8 bits (54), Expect = 9.6
Identities = 19/89 (21%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = +3
Query: 87 IERTVTRWHLLSDNVLLKIGEVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEEIDXVKT 266
I+ ++R + V+ K +++ +Y+++ + E++ + IDD +D +
Sbjct: 19 IDIILSRTQRQTPTVVHKGYSISRIRQFYMRKVKYTQSNFYEKLSTV-IDDFPRLDDIHP 77
Query: 267 FLRNSMSTAEQRDLYALAL-KLNSLINXI 350
F + + +D Y LAL ++N+ N I
Sbjct: 78 FYGDLLHVLYNKDHYKLALGQINTARNII 106
>03_02_0879 +
12097602-12098120,12099215-12099254,12099550-12099601,
12099946-12100008,12100079-12100148,12100452-12100778
Length = 356
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 147 EVAQRLNYYLQEYANLEMQIEEEIKYME 230
EV +RL+ L+ L+++IEE+ KY++
Sbjct: 238 EVQKRLHEQLEIQRKLQLRIEEQGKYLQ 265
>01_01_0433 + 3282195-3285185
Length = 996
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 330 LILMLTRTNHAVPPWTWNCAKKS 262
L L + N A+PPW W K+S
Sbjct: 521 LDLSNNQMNGAIPPWAWETWKES 543
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,664,252
Number of Sequences: 37544
Number of extensions: 128029
Number of successful extensions: 388
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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