Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26o02
         (269 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   1.4  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    23   9.9  

>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +2

Query: 80  FYKAELDFNI*DVILVLRFVTSVMSCWLFLMKANLYRTTFFFSKSIKVFDYIPSDNKTTL 259
           F+K  + F +      L F+++V S   FL+          F     +F  IP+D +  +
Sbjct: 68  FFKKSIFFFVYYCKQALEFISTVFSIIKFLLNRRKVSFLLSFLLLFSLFLLIPNDGRVNI 127

Query: 260 K 262
           K
Sbjct: 128 K 128


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +2

Query: 143 SVMSCWLFLMKANLYRTTFFFSKSIKVFDYIPSDNKTTLKK 265
           SV  CW  +      +  ++ S+ I    Y P     TLKK
Sbjct: 446 SVEKCWSDMFHDFQNQALYWISRYISTMKYNPELAAETLKK 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 922,837
Number of Sequences: 5004
Number of extensions: 14201
Number of successful extensions: 25
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)