Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26o02
         (269 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   0.51 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   0.51 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   3.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   4.7  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    20   4.7  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 0.51
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +2

Query: 116 VILVLRFVTSVMSCWLFLMKANLYRTTFFFSKSIKVFDYI 235
           ++L++  V +    W+F    +L   +  F  S+ +FD I
Sbjct: 66  MLLIMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDII 105


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 0.51
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +2

Query: 116 VILVLRFVTSVMSCWLFLMKANLYRTTFFFSKSIKVFDYI 235
           ++L++  V +    W+F    +L   +  F  S+ +FD I
Sbjct: 66  MLLIMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDII 105


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.6 bits (41), Expect = 3.6
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +1

Query: 169 NES*FISYNFFFFE 210
           N+S  I++NFF+F+
Sbjct: 207 NDSWRITHNFFYFD 220


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.2 bits (40), Expect = 4.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 1   TLNDASPSAEHARGAVTLSHKGKRSFF 81
           T+ND S S +     + LSHK +  ++
Sbjct: 238 TINDESFSLQDGILGMALSHKTQNLYY 264


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.2 bits (40), Expect = 4.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 101 FNI*DVILVLRFVTSVMSCWL 163
           F I  +   + +  +VMSCW+
Sbjct: 53  FKIAPLFKGIGYAAAVMSCWM 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,519
Number of Sequences: 438
Number of extensions: 970
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5138079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)