Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26o01
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   3.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.5  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -2

Query: 219 PMAKFFGLFSKRGFTIFLGSTFLTTNGAAATFFPTFFL-GWLLP 91
           P+ K +G ++  GF       FLT +     F    F+  +++P
Sbjct: 189 PLLKVWGRYTTEGFLTTCSFDFLTDDEDTKVFVTCIFIWAYVIP 232


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -2

Query: 219 PMAKFFGLFSKRGFTIFLGSTFLTTNGAAATFFPTFFL-GWLLP 91
           P+ K +G ++  GF       FLT +     F    F+  +++P
Sbjct: 189 PLLKVWGRYTTEGFLTTCSFDFLTDDEDTKVFVTCIFIWAYVIP 232


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 670 CPEAGFALDNAVW 632
           CP AG+ +++ VW
Sbjct: 512 CPVAGYPIESIVW 524


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 478 STKEAQHHPIRHKHSH 525
           ST    HH + H HSH
Sbjct: 410 STPGPHHHTMGHGHSH 425


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 305 EVQPSGAGCGYTWAILQIWTS 243
           ++ P   G GY   +L  WT+
Sbjct: 92  KIAPIFKGIGYATCVLSCWTN 112


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 305 EVQPSGAGCGYTWAILQIWTS 243
           ++ P   G GY   +L  WT+
Sbjct: 145 KIAPIFKGIGYATCVLSCWTN 165


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 673 KCPEAGFALDNAVW 632
           KCP AG+ ++   W
Sbjct: 539 KCPVAGYPIEEIKW 552


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 673 KCPEAGFALDNAVW 632
           KCP AG+ ++   W
Sbjct: 539 KCPVAGYPIEEIKW 552


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,206
Number of Sequences: 438
Number of extensions: 3619
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)