Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26n16
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical p...    30   1.4  
U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.       30   1.4  
U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.       30   1.4  
Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z48583-5|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z22176-11|CAA80141.1|  784|Caenorhabditis elegans Hypothetical p...    29   3.3  
U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AL132862-31|CAB70234.1|  485|Caenorhabditis elegans Hypothetical...    28   5.7  
AL021446-1|CAA16265.1|  398|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z81494-14|CAJ43905.2|  745|Caenorhabditis elegans Hypothetical p...    28   7.5  
Z81494-8|CAB54212.3|  707|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z81057-7|CAJ43903.2|  745|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical ...    28   7.5  
AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical ...    28   7.5  
Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine re...    27   9.9  
AF022971-9|AAG23978.2|  345|Caenorhabditis elegans Serpentine re...    27   9.9  

>Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical
           protein C50H2.3 protein.
          Length = 838

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +3

Query: 135 WRYD*HRCAVRKLFKQANSKHVFDHFGCSSNYCFNNYVCSI 257
           W+ D H C  +  F   N   V D+  C+   C N   C I
Sbjct: 568 WKKDTHYCKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQI 608


>U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +3

Query: 135 WRYD*HRCAVRKLFKQANSKHVFDHFGCSSNYCFNNYVCSI 257
           W+ D H C  +  F   N   V D+  C+   C N   C I
Sbjct: 568 WKKDTHYCKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQI 608


>U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +3

Query: 135 WRYD*HRCAVRKLFKQANSKHVFDHFGCSSNYCFNNYVCSI 257
           W+ D H C  +  F   N   V D+  C+   C N   C I
Sbjct: 568 WKKDTHYCKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQI 608


>Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical
           protein T01E8.5 protein.
          Length = 1270

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/90 (22%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
 Frame = +3

Query: 423 CIKMKR-VKCNKVRTVTEIVNSDEKIQKTY----ELAEFDLKNLSSLESYETLKI-KLAL 584
           C++ +R V+ + +    E++N D ++++T     EL E  + +L + E ++ +   ++  
Sbjct: 617 CLQAQRDVQISWIEVEREMMNIDARVKRTKLKDCELYEDHVDDLETCELWDIIPFDRIRY 676

Query: 585 SKYMAMLSTLEMTQPLLEIFRNKSRHSANC 674
            +     +  +  QP LE+   K  +S NC
Sbjct: 677 YEAPGDCANFDFVQPFLELLGVKFLNSTNC 706


>Z48583-5|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical
           protein T01E8.5 protein.
          Length = 1270

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/90 (22%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
 Frame = +3

Query: 423 CIKMKR-VKCNKVRTVTEIVNSDEKIQKTY----ELAEFDLKNLSSLESYETLKI-KLAL 584
           C++ +R V+ + +    E++N D ++++T     EL E  + +L + E ++ +   ++  
Sbjct: 617 CLQAQRDVQISWIEVEREMMNIDARVKRTKLKDCELYEDHVDDLETCELWDIIPFDRIRY 676

Query: 585 SKYMAMLSTLEMTQPLLEIFRNKSRHSANC 674
            +     +  +  QP LE+   K  +S NC
Sbjct: 677 YEAPGDCANFDFVQPFLELLGVKFLNSTNC 706


>Z22176-11|CAA80141.1|  784|Caenorhabditis elegans Hypothetical
           protein ZK1098.3 protein.
          Length = 784

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +3

Query: 330 SKRDRFYESFKRYHAS*SLYEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTY 509
           SK   + E+ K   A+  + +H    +   + I +  + C+KV+ V E++   +K+QK+Y
Sbjct: 168 SKVQEYLENQKFKEAAEIVMKHEVVDDYSFEQITLPLILCDKVQIVDELLKISKKLQKSY 227


>U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical
           protein C28G1.5 protein.
          Length = 101

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +3

Query: 339 DRFYESFKRYHAS*SLYEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSD-EKIQKTYEL 515
           DRF ++   +        HA     +   +    V+C   RTVT IVN+D  K+ K + L
Sbjct: 11  DRFSDTDSEHIPRNLTCGHALCHKCITAMVNNSTVECPFCRTVTNIVNNDITKLLKNFAL 70

Query: 516 AE 521
            E
Sbjct: 71  IE 72


>AL132862-31|CAB70234.1|  485|Caenorhabditis elegans Hypothetical
           protein Y73F8A.34a protein.
          Length = 485

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 595 WLCSAPWK*PSRCWKYLE--TKADTRQIA 675
           WLC   WK  ++C +Y+E   K D+R ++
Sbjct: 308 WLCLGDWKNHAQCNRYVEDDNKTDSRSLS 336


>AL021446-1|CAA16265.1|  398|Caenorhabditis elegans Hypothetical
           protein F14F4.1 protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 156 CAVRKLFKQANSKHVFDHFGCSSNYCFNN 242
           C  R+ F +   K  F++F CSS    NN
Sbjct: 336 CRSRRSFTEVTKKRSFENFECSSTATMNN 364


>Z81494-14|CAJ43905.2|  745|Caenorhabditis elegans Hypothetical
           protein F02E9.9b protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +3

Query: 441 VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 560
           V+  K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 158 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 196


>Z81494-8|CAB54212.3|  707|Caenorhabditis elegans Hypothetical
           protein F02E9.9a protein.
          Length = 707

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +3

Query: 441 VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 560
           V+  K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 120 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 158


>Z81057-7|CAJ43903.2|  745|Caenorhabditis elegans Hypothetical
           protein F02E9.9b protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +3

Query: 441 VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 560
           V+  K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 158 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 196


>AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical
           protein K06A5.8a protein.
          Length = 874

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 546 NCLDFLNQIRPIRRF-FGSFHRCLQFR*PFELCCI 445
           N LDF+  ++P+  F FG+F   +     FEL C+
Sbjct: 80  NALDFVEPLKPVNEFDFGAFRYNITKYKFFELLCV 114


>AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical
           protein K06A5.8b protein.
          Length = 942

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 546 NCLDFLNQIRPIRRF-FGSFHRCLQFR*PFELCCI 445
           N LDF+  ++P+  F FG+F   +     FEL C+
Sbjct: 80  NALDFVEPLKPVNEFDFGAFRYNITKYKFFELLCV 114


>Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical
           protein H25K10.6 protein.
          Length = 518

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 474 IVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLS 608
           I++S   ++   E+A  D +NLS L   ET+  K +    M ML+
Sbjct: 247 ILSSIRNVRGDVEIAATDFENLSFLTGLETITSKHSYLSKMTMLN 291


>AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine
           receptor, class h protein37 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/87 (22%), Positives = 40/87 (45%)
 Frame = -2

Query: 661 CLLLFLNISNSGWVISRVLSIAMYLLSANLIFRVS*LSKLLRFFKSNSANS*VFWIFSSL 482
           C L+ +N  + G+ I     IA Y+LS  +I +     K+ + F   +    + +     
Sbjct: 202 CALIVVNCVSIGFAIFVSAKIAFYMLSQRMINQSKATMKMHKKFNERTILQSILY----- 256

Query: 481 FTISVTVRTLLHLTRFIFIHLSTTFAF 401
           FT      ++L++T  + IH++ +  F
Sbjct: 257 FTFCCVPFSVLYITIILNIHIAGSSYF 283


>AF022971-9|AAG23978.2|  345|Caenorhabditis elegans Serpentine
           receptor, class h protein38 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/81 (23%), Positives = 37/81 (45%)
 Frame = -2

Query: 661 CLLLFLNISNSGWVISRVLSIAMYLLSANLIFRVS*LSKLLRFFKSNSANS*VFWIFSSL 482
           C+L+  N  + G+ I     IA Y+LS  +I +     K+ + F   +    + +     
Sbjct: 202 CVLIVANCVSIGFAIFISAKIAFYMLSRRMINQSEATKKMHKKFNERTILQAILY----- 256

Query: 481 FTISVTVRTLLHLTRFIFIHL 419
           FT      ++L+LT  + +H+
Sbjct: 257 FTFCCVPFSVLYLTILLEVHI 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,553,316
Number of Sequences: 27780
Number of extensions: 246169
Number of successful extensions: 675
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)