Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26n15
         (172 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    24   2.3  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    23   4.1  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    23   5.4  

>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = -2

Query: 168 FFNDDMNRKYLMRVPLKCESQNLNSFF*FHKYNLSTNTTNLTKFKCLSLNNLHI 7
           FF    ++ Y   +     ++ LN    + + ++   T NLTK    SLNN  +
Sbjct: 432 FFMRQQSKAYKKLLLRSLYAELLNFSEQYRRLSIKNATKNLTKDNFFSLNNFKV 485


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 17  LFNERHLNLVKFVVFVD 67
           +F  RHL+ VK +VFVD
Sbjct: 364 VFAARHLSEVKGIVFVD 380


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 75  YNLSTNTTNLTKFKCLSLNN 16
           +NL+T    LTK  CL + N
Sbjct: 507 HNLTTECIYLTKSSCLKIGN 526


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 513,338
Number of Sequences: 5004
Number of extensions: 6353
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 2,362,478
effective HSP length: 37
effective length of database: 2,177,330
effective search space used: 41369270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)