Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26n15
         (172 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006748-4|AAF60512.2|  371|Caenorhabditis elegans Hypothetical ...    25   7.2  
U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical pr...    25   9.5  
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>AC006748-4|AAF60512.2|  371|Caenorhabditis elegans Hypothetical
           protein Y39A3B.1 protein.
          Length = 371

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -2

Query: 162 NDDMNRKYLMRVPLKCESQNLNSFF*FHKY--NLSTNTTNLTKFKCLSLNNLH 10
           +DD+ +KY       CE   L+S + FH +  NL  N  N+T     SL+ LH
Sbjct: 234 DDDLVQKYTRAYDRSCEM--LSSDWSFHPWSLNLQMNLANIT-----SLDRLH 279


>U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical
           protein F46F11.9b protein.
          Length = 1282

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 132 RVPLKCESQNLNSFF*FHKYNLSTNTTNLT 43
           RVPLKC  + LN      K  + TN   L+
Sbjct: 791 RVPLKCRGKRLNKTAKQQKSKIYTNDERLS 820


>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical
           protein F46F11.9a protein.
          Length = 1280

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 132 RVPLKCESQNLNSFF*FHKYNLSTNTTNLT 43
           RVPLKC  + LN      K  + TN   L+
Sbjct: 789 RVPLKCRGKRLNKTAKQQKSKIYTNDERLS 818


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,796,998
Number of Sequences: 27780
Number of extensions: 34322
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 12,740,198
effective HSP length: 37
effective length of database: 11,712,338
effective search space used: 222534422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)