Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26n15
         (172 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   1.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   2.4  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    19   4.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    19   4.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    19   4.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   7.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    18   9.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    18   9.7  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    18   9.7  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 120 KCESQNLNSFF*FHKYNLSTNTTNLT 43
           KC ++N+ +   F K NLS ++++ T
Sbjct: 710 KCHNRNVTTCNMFRKTNLSGDSSSGT 735


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 156 DMNRKYLMRV-PLKCESQNLNSFF 88
           D+    ++R+ PLK   Q  +SFF
Sbjct: 149 DLKTDKILRIYPLKSSDQTSDSFF 172


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = -2

Query: 168 FFNDDMNRKYL 136
           FFNDD++ +++
Sbjct: 112 FFNDDLSTRWI 122


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = -2

Query: 168 FFNDDMNRKYL 136
           FFNDD++ +++
Sbjct: 112 FFNDDLSTRWI 122


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = -2

Query: 168 FFNDDMNRKYL 136
           FFNDD++ +++
Sbjct: 112 FFNDDLSTRWI 122


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 23  NERHLNLVKFVVFVDRLYL 79
           N  ++NLV+   F D++ L
Sbjct: 625 NNNYINLVRPNTFTDKVNL 643


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 29  RHLNLVKFVVFVDRLYL 79
           R + +VK+ +F+  LY+
Sbjct: 910 RTMKVVKYHLFLTNLYI 926


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 29  RHLNLVKFVVFVDRLYL 79
           R + +VK+ +F+  LY+
Sbjct: 948 RTMKVVKYHLFLTNLYI 964


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 129 VPLKCESQNLN 97
           VPL+C+  N N
Sbjct: 59  VPLQCDLSNQN 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,416
Number of Sequences: 438
Number of extensions: 446
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 36
effective length of database: 130,575
effective search space used:  2611500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)