Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26n12
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    30   0.15 
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    29   0.20 
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   2.5  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    25   5.7  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    24   7.6  
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    24   10.0 
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    24   10.0 
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    24   10.0 
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    24   10.0 

>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 29.9 bits (64), Expect = 0.15
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 125 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNRII 21
           Y    ES + D+ +  SH+ A +I Q  R+G R++
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKRLL 97


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.5 bits (63), Expect = 0.20
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 201 VRVHRADTGRSSNELDRXTTELERRGMGL-QHLAG 302
           +R H+   GR+  ELDR  T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 7    MSTTYIILLPFLLTCAIASAAECENATSLS 96
            +S TYIILLPF   C     A  +++  +S
Sbjct: 1023 LSKTYIILLPFQSLCPGGKQANHQSSEKMS 1052


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +1

Query: 28  LLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVN 165
           L+     C I     C  A  L  + DSL+  Y+  SP   K V+N
Sbjct: 371 LISIFKRCEIMLPKTCTVAHLLDKLFDSLVLKYNTSSP---KFVIN 413


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 2   IKCRRLILFCYRFSS 46
           I+CR  + FC+RF S
Sbjct: 66  IQCRDFMFFCWRFQS 80


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 126 RSGVSPRLQNRSQPDPAFETC*HS*VRVHRADTGRSSNELD 248
           RS  S R       +P   +     +  H+AD+G S NE++
Sbjct: 11  RSSTSKRSVIDDDSEPELPSMTKEAIASHKADSGSSDNEVE 51


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 79  NATSLSLMIDSLLATYDRESPPDSKIVV 162
           +A SL L    LLA  DRE+  ++K+++
Sbjct: 270 DAESLKLAASRLLALADREADNNAKLIM 297


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 268 NAGEWGCSTWLVSSERLWRPDV 333
           N G+W   TW  +  R W  DV
Sbjct: 181 NTGDWIYDTWSDNELRTWLHDV 202


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -3

Query: 245 QFIXRSASIRTVDSDSRMLACLKCRVRLTTILESGGDSRSYVARS-ESIMRDS 90
           +FI    S+   D DS  L      V L  +L+S  + R Y+ +   S + DS
Sbjct: 205 EFIPLFNSLSNDDQDSVRLLSFDIMVSLAEVLKSDSEIRHYLLQPLRSFVSDS 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,542,772
Number of Sequences: 5004
Number of extensions: 28453
Number of successful extensions: 75
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)