Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26n12
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 30 0.77
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 30 0.77
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 1.0
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 28 3.1
09_04_0031 + 13946692-13946774,13947007-13948012 28 3.1
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 3.1
09_04_0028 - 13928542-13929538,13929736-13929818 27 4.1
03_06_0716 - 35695158-35696795,35697075-35697288,35697290-356973... 27 4.1
02_05_1184 + 34802749-34802892,34802981-34803220,34803636-348039... 27 4.1
10_06_0175 - 11490280-11491000,11491869-11491947,11493613-114938... 27 7.2
09_04_0430 + 17502387-17503505 26 9.5
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 26 9.5
03_03_0256 + 15898702-15900420 26 9.5
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 29.9 bits (64), Expect = 0.77
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -2
Query: 303 HQPSAAAPFPCVPTQSXVDPIHXKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 139
H P AAA P VP++ P + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 29.9 bits (64), Expect = 0.77
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -2
Query: 330 VRPPQAFRGHQPSAAAPFPCVPTQSXVDPIHXKICQYPHGGLGLTNVSMSQMQGQV 163
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 1.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 216 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 127
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 201 VRVHRADTGRSSNELDRXTTELERRGMGLQHLAGVLGTL 317
V+ H + R S EL+R ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>09_04_0031 + 13946692-13946774,13947007-13948012
Length = 362
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 278 NGAAALGWCPRNACGGLTWYC*TRLQXPPGDYALR 382
NG AALGW R+ G L+ + TR D ++
Sbjct: 4 NGTAALGWAARDTSGHLSPFSFTRRVQQEDDVTIK 38
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 88 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLXMN 243
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>09_04_0028 - 13928542-13929538,13929736-13929818
Length = 359
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 278 NGAAALGWCPRNACGGLTWYC*TRLQXPPGDYALR 382
+G AALGW R+A G L+ + TR D ++
Sbjct: 4 DGTAALGWAARDASGHLSPFSFTRRVQEEDDVTIK 38
>03_06_0716 -
35695158-35696795,35697075-35697288,35697290-35697372,
35697695-35697865
Length = 701
Score = 27.5 bits (58), Expect = 4.1
Identities = 25/94 (26%), Positives = 43/94 (45%)
Frame = -3
Query: 302 TSQVLQPHSPAFQLSRXSIQFIXRSASIRTVDSDSRMLACLKCRVRLTTILESGGDSRSY 123
T ++ P+S +F++ + ++ I S T +SD + L R+T LE S SY
Sbjct: 529 TQRIAVPYSGSFEVIKYRLKQIYESVESSTEESD---VPTLIVHERVTIRLE----SESY 581
Query: 122 VARSESIMRDSDVAFSHSAALAIAQVRRNGNRII 21
V S SD+ S S + + R G +++
Sbjct: 582 VTLQWSSDPISDMV-SDSVVAMVLNIGREGPKVV 614
>02_05_1184 +
34802749-34802892,34802981-34803220,34803636-34803950,
34804030-34804209,34804312-34804504,34805062-34805324,
34805461-34805590,34805719-34805786,34805951-34806199,
34806284-34806357,34808052-34808143,34808603-34808685,
34810337-34810408,34810558-34810683,34810996-34811037
Length = 756
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 146 SGGDSRSYVARSESIMRDSDVAFSHSAALAIAQVRRNGNRI 24
S GD + + I + SDV SHSA + V NG +
Sbjct: 339 SFGDRQEIKLHRQGIYKASDVTLSHSAQIGANSVVGNGTSV 379
>10_06_0175 -
11490280-11491000,11491869-11491947,11493613-11493811,
11494003-11494044
Length = 346
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 327 RPPQAFRGHQPSAAAPFPCVPTQSXV 250
+PPQ G P+ P+P PTQ V
Sbjct: 128 QPPQPSLGWSPNLNLPYPLPPTQPTV 153
>09_04_0430 + 17502387-17503505
Length = 372
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 90 TVPHDRLAPRNVRSGVSPRLQNRSQPDPAFETC*HS*VRVHRAD 221
+ P R+AP+ + +P ++ + P P F T S +H+ D
Sbjct: 201 STPPQRVAPQPPATAAAPPIEPVAPPSPTFWTVCMSCCHIHQYD 244
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 207 VHRADTGRSSNELDRXTTELERRGMG 284
V+ A +SS+ L + TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>03_03_0256 + 15898702-15900420
Length = 572
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = -3
Query: 188 ACLKCRVRLTTILESGGDSRSYVARSESIMRDSDVAFSH 72
A + C++++ +LES R+Y+ S+++ D++FS+
Sbjct: 301 ASMDCKIKIWDVLESRTCMRTYMGHSKAV---RDISFSN 336
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,477,696
Number of Sequences: 37544
Number of extensions: 248334
Number of successful extensions: 765
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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