Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26n07
         (261 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0764 + 20417562-20417729,20417981-20418071,20418175-204182...    25   6.3  

>10_08_0764 +
           20417562-20417729,20417981-20418071,20418175-20418227,
           20418259-20418417,20418493-20418564,20419186-20419258,
           20419642-20419687,20420173-20420236,20420321-20420374,
           20420430-20420540,20420924-20421016
          Length = 327

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 19  YKKSTTPIFNNKYIVLNCFRAKVFVQRYNFQILH 120
           Y  +T  +F+    ++N  R+ VFV R N Q++H
Sbjct: 69  YGWTTQKVFHFLNFLVNGVRSIVFVLRRNVQLIH 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,185,282
Number of Sequences: 37544
Number of extensions: 55612
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)