Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26n07
(261 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132858-2|CAB60476.2| 821|Caenorhabditis elegans Hypothetical ... 28 1.1
AL132862-15|CAB60549.1| 703|Caenorhabditis elegans Hypothetical... 26 4.2
Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical pr... 25 5.6
U28944-9|AAL02438.1| 122|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z81088-8|CAB03130.2| 332|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z75554-6|CAA99958.1| 304|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z49887-3|CAC70079.1| 639|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z49887-2|CAA90057.1| 625|Caenorhabditis elegans Hypothetical pr... 25 7.4
AY305829-1|AAR11974.1| 281|Caenorhabditis elegans nuclear recep... 25 7.4
AF273803-1|AAG15152.1| 433|Caenorhabditis elegans nuclear recep... 25 7.4
AF068867-1|AAC35506.1| 639|Caenorhabditis elegans putative acti... 25 7.4
AF016443-1|AAC24277.1| 366|Caenorhabditis elegans Hypothetical ... 25 7.4
AF016438-6|AAZ32805.1| 284|Caenorhabditis elegans Nuclear hormo... 25 7.4
AF016438-5|AAB65893.2| 408|Caenorhabditis elegans Nuclear hormo... 25 7.4
>AL132858-2|CAB60476.2| 821|Caenorhabditis elegans Hypothetical
protein Y113G7A.3 protein.
Length = 821
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 71 VLEQKCSCNVIIFKFCTIFYRKKVCYFP 154
VL QK SC I+ C + YR K+ P
Sbjct: 63 VLCQKASCKAILNPLCAVDYRAKIWMCP 90
>AL132862-15|CAB60549.1| 703|Caenorhabditis elegans Hypothetical
protein Y73F8A.21 protein.
Length = 703
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 47 IINILC*IVLEQKCSCNVIIFKFC 118
+INILC I L + +++F FC
Sbjct: 252 VINILCKIALVKSSFAPLMVFNFC 275
>Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical
protein C38C10.5b protein.
Length = 1374
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -3
Query: 163 LFIWKITYFFSIKYRAKFENY 101
L+++K+ + FS+ Y F+NY
Sbjct: 690 LYMYKVVHQFSLAYEKHFKNY 710
>Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical
protein C38C10.5a protein.
Length = 1368
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -3
Query: 163 LFIWKITYFFSIKYRAKFENY 101
L+++K+ + FS+ Y F+NY
Sbjct: 684 LYMYKVVHQFSLAYEKHFKNY 704
>Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical
protein C38C10.5b protein.
Length = 1374
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -3
Query: 163 LFIWKITYFFSIKYRAKFENY 101
L+++K+ + FS+ Y F+NY
Sbjct: 690 LYMYKVVHQFSLAYEKHFKNY 710
>Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical
protein C38C10.5a protein.
Length = 1368
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -3
Query: 163 LFIWKITYFFSIKYRAKFENY 101
L+++K+ + FS+ Y F+NY
Sbjct: 684 LYMYKVVHQFSLAYEKHFKNY 704
>U28944-9|AAL02438.1| 122|Caenorhabditis elegans Hypothetical
protein C18A3.9 protein.
Length = 122
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 68 IVLEQKCSCNVIIFKFCTIFYRKK 139
+VL C+ N++IF + +IF RK+
Sbjct: 95 LVLVNVCNNNLLIFYYSSIFKRKR 118
>Z81088-8|CAB03130.2| 332|Caenorhabditis elegans Hypothetical
protein F53F1.8 protein.
Length = 332
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/55 (23%), Positives = 24/55 (43%)
Frame = -3
Query: 178 KMVY*LFIWKITYFFSIKYRAKFENYNVARTLLL*NNLAQYIYY*ILAWLIFCIN 14
KM + + + ++ YF + Y + Y R N+ IY AW++ I+
Sbjct: 245 KMTFIVCLVELIYFAFVVYSLQINQYMNKRIFYFLYNILCVIYSTFSAWMLLIIS 299
>Z75554-6|CAA99958.1| 304|Caenorhabditis elegans Hypothetical
protein ZC455.7 protein.
Length = 304
Score = 25.0 bits (52), Expect = 7.4
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -3
Query: 112 FENYNVAR-TLLL*NNLAQYIYY*ILAWLIFCINFDTF 2
F+N+ A TLL NN+ +YI +LA +I +F TF
Sbjct: 127 FQNFFGATFTLLTVNNILRYISAAVLAGIIAISSFLTF 164
>Z49887-3|CAC70079.1| 639|Caenorhabditis elegans Hypothetical
protein F09B9.2b protein.
Length = 639
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +1
Query: 1 EKCQSLYKKSTTPIF--NNKYIVLNCFRAK 84
+KC KK + + N+KY +NCF+ K
Sbjct: 17 KKCDVCRKKCSGDVLKANDKYFHINCFQCK 46
>Z49887-2|CAA90057.1| 625|Caenorhabditis elegans Hypothetical
protein F09B9.2a protein.
Length = 625
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +1
Query: 1 EKCQSLYKKSTTPIF--NNKYIVLNCFRAK 84
+KC KK + + N+KY +NCF+ K
Sbjct: 3 KKCDVCRKKCSGDVLKANDKYFHINCFQCK 32
>AY305829-1|AAR11974.1| 281|Caenorhabditis elegans nuclear receptor
NHR-56 protein.
Length = 281
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 4 KCQSLYKKSTTPIFNNKYIVLNCFRAKVFVQRYN 105
K +SL K P F N + VL+C F +R N
Sbjct: 2 KRKSLCKICGNPAFGNHFGVLSCRACAAFFRRTN 35
>AF273803-1|AAG15152.1| 433|Caenorhabditis elegans nuclear receptor
NHR-56 protein.
Length = 433
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 4 KCQSLYKKSTTPIFNNKYIVLNCFRAKVFVQRYN 105
K +SL K P F N + VL+C F +R N
Sbjct: 30 KRKSLCKICGNPAFGNHFGVLSCRACAAFFRRTN 63
>AF068867-1|AAC35506.1| 639|Caenorhabditis elegans putative
actin-binding proteinUNC-115 protein.
Length = 639
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +1
Query: 1 EKCQSLYKKSTTPIF--NNKYIVLNCFRAK 84
+KC KK + + N+KY +NCF+ K
Sbjct: 17 KKCDVCRKKCSGDVLKANDKYFHINCFQCK 46
>AF016443-1|AAC24277.1| 366|Caenorhabditis elegans Hypothetical
protein C17E7.5 protein.
Length = 366
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 37 PIFNNKYIVLNCFRAKVFVQR 99
P F+N Y VL C K+F +R
Sbjct: 45 PAFSNNYGVLTCDACKMFYRR 65
>AF016438-6|AAZ32805.1| 284|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 56, isoform b protein.
Length = 284
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 4 KCQSLYKKSTTPIFNNKYIVLNCFRAKVFVQRYN 105
K +SL K P F N + VL+C F +R N
Sbjct: 5 KRKSLCKICGNPAFGNHFGVLSCRACAAFFRRTN 38
>AF016438-5|AAB65893.2| 408|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 56, isoform a protein.
Length = 408
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 4 KCQSLYKKSTTPIFNNKYIVLNCFRAKVFVQRYN 105
K +SL K P F N + VL+C F +R N
Sbjct: 5 KRKSLCKICGNPAFGNHFGVLSCRACAAFFRRTN 38
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,304,961
Number of Sequences: 27780
Number of extensions: 70052
Number of successful extensions: 173
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 12,740,198
effective HSP length: 65
effective length of database: 10,934,498
effective search space used: 229624458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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