Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26n07
         (261 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   0.62 
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    20   5.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    19   7.6  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 0.62
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 148 ITYFFSIKYRAKFENYNVARTLLL*NNLAQYIYY 47
           ITY   ++ R  F  +N+    +L N++A  ++Y
Sbjct: 203 ITYEIRLRRRPMFYVFNLILPCILINSVALLVFY 236


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 108 KIITLHEHFCSKTI*HNIF 52
           KII LH + C+     N+F
Sbjct: 20  KIIGLHNNMCTSLNLSNLF 38


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 136 FSIKYRAKFENYN 98
           F +KY+ K+ +YN
Sbjct: 32  FQVKYQWKYFDYN 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,289
Number of Sequences: 438
Number of extensions: 938
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4762122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)