Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26n06
(617 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|... 29 0.41
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 29 0.54
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 29 0.71
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 0.94
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi... 27 1.6
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 27 1.6
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 27 2.2
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 27 2.9
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc... 27 2.9
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 26 5.0
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 26 5.0
SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase |S... 26 5.0
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe... 26 5.0
>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 29.5 bits (63), Expect = 0.41
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -2
Query: 478 RTSRSQSGIPMSETRPPLDLDKASEVDPVFYCV 380
+T+ S S +P+SE P +L+K +V P ++C+
Sbjct: 148 KTNFSSSTVPVSELPLPKNLEKLIDVHPSWFCL 180
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 29.1 bits (62), Expect = 0.54
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = -1
Query: 353 GIPNLLLGTVKNSRSPTNLIPVGTLLYCIKNFSLSPSSWTKCIAPGERM 207
G+P+++ + + SP GTLL C N W+ + E++
Sbjct: 413 GVPSMVSASTNAAPSPVGTFNRGTLLPCQSNLEEENKEWSSILQDDEKI 461
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 28.7 bits (61), Expect = 0.71
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 238 QELGDSEKFFIQYNNVPTGIKFVGDLLF 321
Q +G + F QYNNVP GIK V + ++
Sbjct: 263 QRIGYTYGHFEQYNNVPLGIKGVIEAIY 290
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 0.94
Identities = 23/80 (28%), Positives = 34/80 (42%)
Frame = -2
Query: 526 SHREPLAVRYPPSTVWRTSRSQSGIPMSETRPPLDLDKASEVDPVFYCVSCLCSLTSMES 347
S+ P++ P+T S + P S P + +S +DP + L S TS+E
Sbjct: 98 SYSSPVSSYSDPATSQLPSSTSFFSPTSSEYTPSSTESSSLLDPSSVSSAILPSSTSVEV 157
Query: 346 QISSLGPSKIADLRQT*FLS 287
ISS S L + F S
Sbjct: 158 SISSSSLSSSDPLTSSTFSS 177
>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
Hat1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = -1
Query: 275 YCIKNFSLSPS--SWTKCIAPGERMRSASFIYFVPLKSYPNCFQAYNCFILPF 123
YC++ + W K I G R R + F+ P + + Q YN + F
Sbjct: 174 YCLRGYCTVYKYYKWDKLIHDGIRARISQFVILPPFQHQGHGSQLYNAIVSTF 226
>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
Adh1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 350
Score = 27.5 bits (58), Expect = 1.6
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +1
Query: 280 NVPTGIKFVGDLLFLTVPRRRFGIPSTLNYIDRRHSKKLDP--LLKPYPNPEAVSSLTSV 453
++P G K D+ +LTV + N ID + + L+KPY + S+L V
Sbjct: 272 SMPAGAKLGADIFWLTVKMLKICGSHVGNRIDSIEALEYVSRGLVKPYYKVQPFSTLPDV 331
Query: 454 YR 459
YR
Sbjct: 332 YR 333
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 27.1 bits (57), Expect = 2.2
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -1
Query: 248 PSSWTKCIAPGERMRSASFIYFVPLKSYP 162
P+ W+ ++P E + AS +++VP +P
Sbjct: 161 PTDWSVAMSPPETEQDASTLFWVPANLHP 189
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 26.6 bits (56), Expect = 2.9
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -1
Query: 362 NVDGIPNLLLGTVKNSRSPTNLIPVGTLLYCIKNFSLSPSSWTKCIAPGERMRSASFIY 186
+++ + +L G P + P GT L + F+ + WT CIAP +M +Y
Sbjct: 1043 SLESVRKVLQGDCVKWFIPNGVFPNGTRLEHAR-FNCARYLWTLCIAPRLKMSPHDALY 1100
>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
Taz1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 26.6 bits (56), Expect = 2.9
Identities = 17/73 (23%), Positives = 32/73 (43%)
Frame = +3
Query: 207 HTLARSDTFRPRARRQREILYTVQ*CADRNQVCRRSAIFDGPKEEIWDSIDVKLHRQETQ 386
HTL++S R ++ Q+E + A R RR A ++++ + E +
Sbjct: 462 HTLSKSLKSRAKSLSQKEAANRSKLIAKRGDNLRREASLSSEQDDLSEDFPPVRESDEQE 521
Query: 387 *KTGSTSEALSKS 425
++G S A+ S
Sbjct: 522 SRSGGRSSAMRVS 534
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 352 PSTLNYIDRRHSKKLDPLLKPYP 420
PS + R H + +D LKPYP
Sbjct: 481 PSAARTVWRGHDRYIDTYLKPYP 503
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 232 FVQELGDSEKFFIQYNNVPTGIKFVGDLLFLTVPR 336
FV DS F +Y P IKFV D+ ++PR
Sbjct: 411 FVTTSDDSSMRFWEYGT-PVPIKFVADIAMHSMPR 444
>SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 577 YVSANCKPGSRVASLVFSHREPLAVRYPPSTVWR 476
Y+S+ + GS + VFS L V+ P + VWR
Sbjct: 258 YMSSAGRVGSMLPVEVFSMSVRLIVKLPSTAVWR 291
>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 5.0
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = -1
Query: 296 IPVGTLLYCIKNFSLSPSSWTKCIAPGER--MRSASFIYFVPLKSY--PNCFQAYNCFIL 129
+ VG L+Y PSS T + P +R +R + FV L + P+ + C+ L
Sbjct: 198 LAVGNLMYSAIRLEFDPSSATYSLPPYQRPFLRGITHSIFVDLFIFLSPSSARHCLCWSL 257
Query: 128 PF 123
P+
Sbjct: 258 PY 259
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,054
Number of Sequences: 5004
Number of extensions: 59070
Number of successful extensions: 154
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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