Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26n06
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0091 - 13498143-13498499,13499005-13499301 29 3.9
03_02_0511 + 9016215-9016425,9017292-9017365,9018399-9018609,901... 29 3.9
07_01_0785 + 6095041-6095135,6095455-6095760,6098458-6098554,609... 28 5.2
01_06_1768 + 39771025-39771241,39771284-39771513,39772165-397722... 28 5.2
12_02_0346 - 17776871-17781445 28 6.8
04_04_0492 + 25610685-25610871,25610977-25611131,25612650-256126... 28 6.8
11_02_0118 - 8486986-8488925,8488971-8489041,8489884-8490728 27 9.0
10_08_0648 + 19579299-19580618 27 9.0
07_01_0495 + 3722319-3722517,3723325-3723482,3723652-3723929,372... 27 9.0
07_01_0069 + 505291-505327,505726-505956,506317-506652,507025-50... 27 9.0
>12_02_0091 - 13498143-13498499,13499005-13499301
Length = 217
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 571 SANCKPGSRVASLVFSHREPLAVRYPPST--VWRTSRSQSGIPMSETRPP 428
S CK RV +L+ S +R PP+T R SR+ + + + RPP
Sbjct: 52 STRCKMDLRVLTLLLSLISGNVLRNPPATRSSQRESRNSTKVETQDMRPP 101
>03_02_0511 +
9016215-9016425,9017292-9017365,9018399-9018609,
9019235-9019263,9019646-9020798,9021022-9021251
Length = 635
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = -2
Query: 571 SANCKPGSRVASLVFSHREPLAVRYPPSTVWRTSRSQSGIPMSETRP 431
+A+ K +S P+ + P+ W+TSRS P S P
Sbjct: 375 TAHWKTSRSACDTPYSRASPIPEQEVPTAQWKTSRSACDTPYSRNSP 421
>07_01_0785 +
6095041-6095135,6095455-6095760,6098458-6098554,
6098943-6098999,6099202-6099751,6099922-6100234,
6100245-6100335,6101002-6101469
Length = 658
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 130 KMKQLYAW-KQLGYDFNGTKYIKDADRIRSPGAIHFVQELGDSEKFFIQ--YNNVPTGIK 300
++++LY W +Q G + +G R PGA ++L ++E FF+ + P GI
Sbjct: 75 QLRELYDWLQQAGENSSGGVQTSSTTASRRPGAALSPEDLTETEWFFLMSASYSFPPGIG 134
Query: 301 FVG 309
G
Sbjct: 135 LPG 137
>01_06_1768 +
39771025-39771241,39771284-39771513,39772165-39772245,
39772468-39772824,39772942-39773046
Length = 329
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 334 RRRFGIPSTLN-YIDRRHSKKLDPLLKPYPNPEAVSSLTS 450
RRR GIP+ + ++ RRH+ L L P + +S + S
Sbjct: 26 RRRRGIPAAVTGFLSRRHAPALQRRLAPLHGEDLISPMRS 65
>12_02_0346 - 17776871-17781445
Length = 1524
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +1
Query: 349 IPSTLNYIDRRHSKKLDPLLKPYPNPEAVSSLTSVYRTAIDSCARLWMVDTGLLEVPGAR 528
+ S+L +D R + +++ K +A+ LTS+ C +L + TGL E+P +
Sbjct: 1345 LSSSLTKLDLRWNDEVECFTKE--QEKALHILTSIEDLEFSRCKKLQSLPTGLSEIPNIK 1402
>04_04_0492 +
25610685-25610871,25610977-25611131,25612650-25612665,
25612763-25612773
Length = 122
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1
Query: 251 SPSSWTKCIAPGERMRSASF 192
SP+ W APG R RSASF
Sbjct: 13 SPTCWVSLHAPGPRGRSASF 32
>11_02_0118 - 8486986-8488925,8488971-8489041,8489884-8490728
Length = 951
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = -2
Query: 367 SLTSMESQISSLGPSKIADLRQT*FLSAHYCTV*RISRCLLALGRNVSLRASVCGLHLLY 188
S++ + QI L + DL QT + ++ ++ R L L VSL A V + L
Sbjct: 602 SISKLPEQIGELQQLETIDLTQT-MIKELPKSIVKLKRLLFLLADEVSLPAGVGNMKALQ 660
Query: 187 ILFH 176
L+H
Sbjct: 661 KLYH 664
>10_08_0648 + 19579299-19580618
Length = 439
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 561 VSQDRGWLHLSSRTGNL*QSGIHHPQSGARVDRSPV 454
+S RG+L LS+ TGN + +P +G R+ P+
Sbjct: 109 LSSSRGYLALSNPTGNPRVITLFNPVTGRRIPLPPI 144
>07_01_0495 +
3722319-3722517,3723325-3723482,3723652-3723929,
3723946-3724474
Length = 387
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 545 GGFTCLLAPGTSSSP 501
GG+TC+ PGTS +P
Sbjct: 88 GGYTCVCPPGTSGNP 102
>07_01_0069 +
505291-505327,505726-505956,506317-506652,507025-507372,
507735-508594,508902-508971,509157-509371,509477-509537,
509606-509715,510644-510694,510794-510916
Length = 813
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 390 KTGSTSEALSKSRGGLVSDIGIPDCDRLV-RQTVDGGYRTARGS 518
+T S+ L + RGG +S + +P+ D+ V Q G + G+
Sbjct: 278 RTPGKSKTLKQRRGGAISTLAVPEGDKEVDEQEAPGASASVEGA 321
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,865,368
Number of Sequences: 37544
Number of extensions: 395506
Number of successful extensions: 1118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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