Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26n06
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical...    31   0.66 
AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical...    31   0.66 
AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical...    31   0.66 
AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans large-conduct...    31   0.66 
AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans large-conduct...    31   0.66 
AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans large-conduct...    31   0.66 
AC017117-3|AAF16619.1|  339|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z81070-7|CAD30437.1|  608|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z81070-6|CAB03000.1|  677|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z70684-1|CAA94597.1|  580|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor staphylo...    29   3.5  
AF022982-8|AAB69934.1|  234|Caenorhabditis elegans Hypothetical ...    28   6.1  
Z70207-3|CAA94132.1|  336|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical
           protein Y51A2D.19c protein.
          Length = 1131

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 435 DRLWIWIRLQKWIQFFTVSPVYV 367
           D++W  + +  WI FFT+ P +V
Sbjct: 202 DKVWFLLEMYSWIDFFTIPPSFV 224


>AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical
           protein Y51A2D.19b protein.
          Length = 1118

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 435 DRLWIWIRLQKWIQFFTVSPVYV 367
           D++W  + +  WI FFT+ P +V
Sbjct: 202 DKVWFLLEMYSWIDFFTIPPSFV 224


>AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical
           protein Y51A2D.19a protein.
          Length = 1140

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 435 DRLWIWIRLQKWIQFFTVSPVYV 367
           D++W  + +  WI FFT+ P +V
Sbjct: 202 DKVWFLLEMYSWIDFFTIPPSFV 224


>AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans
           large-conductance calcium-activatedpotassium channel
           SLO-1c protein.
          Length = 1131

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 435 DRLWIWIRLQKWIQFFTVSPVYV 367
           D++W  + +  WI FFT+ P +V
Sbjct: 202 DKVWFLLEMYSWIDFFTIPPSFV 224


>AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans
           large-conductance calcium-activatedpotassium channel
           SLO-1b protein.
          Length = 1118

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 435 DRLWIWIRLQKWIQFFTVSPVYV 367
           D++W  + +  WI FFT+ P +V
Sbjct: 202 DKVWFLLEMYSWIDFFTIPPSFV 224


>AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans
           large-conductance calcium-activatedpotassium channel
           SLO-1a protein.
          Length = 1140

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 435 DRLWIWIRLQKWIQFFTVSPVYV 367
           D++W  + +  WI FFT+ P +V
Sbjct: 202 DKVWFLLEMYSWIDFFTIPPSFV 224


>AC017117-3|AAF16619.1|  339|Caenorhabditis elegans Hypothetical
           protein F43C11.9 protein.
          Length = 339

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = -2

Query: 559 KPGSRVASLVFSHREPLAVRYPPSTVWRTSRSQSGIPMSETRPPLDLDKASEVDP 395
           KP +  +S   S  EP +   PPS V +  +S+SG+P        D D +SEV P
Sbjct: 231 KPSNEASS---SQLEPTSASQPPSRVDQILKSRSGLPTK------DADSSSEVAP 276


>Z81070-7|CAD30437.1|  608|Caenorhabditis elegans Hypothetical
           protein F26E4.7b protein.
          Length = 608

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 61  INYVLLIFVLSNCVNCNVYIGNGKMKQLYAWKQL-GYDFNGTKYIKDAD 204
           I +++ IF+L   +  +++    +M  L  W+ L GY    T Y+KD++
Sbjct: 2   IPFLVFIFILFTPIKSDLWAETERMPDLQQWRALCGYYAVATAYMKDSN 50


>Z81070-6|CAB03000.1|  677|Caenorhabditis elegans Hypothetical
           protein F26E4.7a protein.
          Length = 677

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 61  INYVLLIFVLSNCVNCNVYIGNGKMKQLYAWKQL-GYDFNGTKYIKDAD 204
           I +++ IF+L   +  +++    +M  L  W+ L GY    T Y+KD++
Sbjct: 2   IPFLVFIFILFTPIKSDLWAETERMPDLQQWRALCGYYAVATAYMKDSN 50


>Z70684-1|CAA94597.1|  580|Caenorhabditis elegans Hypothetical
           protein F28D1.1 protein.
          Length = 580

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 548 AGGFTCLLAPGTSSSPVSTIHSLAHESIAVR 456
           AGGFT +L PG     V T+ S  +E+ + R
Sbjct: 436 AGGFTSMLVPGAGDPNVDTLRSNPYETKSQR 466


>U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor
           staphylococcal nuclease homologprotein 1 protein.
          Length = 914

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 333 KEEIWDSIDVKLHRQETQ*KTGSTSEALSKSRGGLVSDIGIPDCDRLVRQTVDGG 497
           K+ IW +   + H++E + +   TSE     R   V+DI  P   R   Q ++ G
Sbjct: 662 KKNIWANFTEEQHQEEVEVQQADTSERKQNFRQVAVTDIA-PGALRFSAQNIEDG 715


>AF022982-8|AAB69934.1|  234|Caenorhabditis elegans Hypothetical
           protein T23B12.1 protein.
          Length = 234

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 433 PPLDLDKASEVDPVFYCVSCLCSLTSMESQIS-SLGPSKI 317
           P + +++ASE    +YC +CL S   ++S  S S  P+K+
Sbjct: 180 PTVSIEEASEPSFKYYCKTCLVSKKVIDSNRSRSPSPAKL 219


>Z70207-3|CAA94132.1|  336|Caenorhabditis elegans Hypothetical
           protein F15A2.3 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 160 IASKRTIVSFCHSQCKHY 107
           +A+K T+  FCH  CK++
Sbjct: 71  VANKSTLAVFCHGPCKYF 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,295,231
Number of Sequences: 27780
Number of extensions: 342735
Number of successful extensions: 997
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)