Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26m23
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 127 1e-30
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 30 0.25
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 28 1.0
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 28 1.4
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo... 28 1.4
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple... 26 5.5
SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase |Schizo... 25 7.2
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ... 25 9.5
>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 127 bits (307), Expect = 1e-30
Identities = 64/144 (44%), Positives = 94/144 (65%), Gaps = 4/144 (2%)
Frame = +3
Query: 234 KFVEEFFDQNPLSQLGLIAMKNKRAEKITDLSGNVRKHIKAIQGLSNTPLTGEPSLQNTL 413
+FV EFF+QNP+SQL +I + + A +ITDL GN + HI+ ++ L + +G SLQN L
Sbjct: 118 EFVLEFFEQNPISQLSIIGVMDGIAHRITDLHGNPQSHIQKLKSLRDC--SGNFSLQNAL 175
Query: 414 ELAGRILRPLPGHASRELLVLFASLTTCDPSDINTTIETLKTDGIRCSVIGLAAEVRICK 593
E+A L + H +RE+L++F S+ + DP DI TI+ L D IR ++GLAAEV ICK
Sbjct: 176 EMARASLSHIASHGTREVLIIFGSILSSDPGDIFKTIDALVHDSIRVRIVGLAAEVAICK 235
Query: 594 KMCQDTNGD----YGVVLDDCHYQ 653
++C TN YGVV+ + H++
Sbjct: 236 EICNKTNSSTKNAYGVVISEQHFR 259
Score = 33.9 bits (74), Expect = 0.021
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +2
Query: 89 DDPKEYRWETGYEKTWEAIKEDEDGLVESLV 181
DD + Y WE Y+++W+ ++ED +G + ++
Sbjct: 32 DDNEGYTWEGEYQRSWDIVQEDAEGSLVGVI 62
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 30.3 bits (65), Expect = 0.25
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 426 RILRPLPGHASRELLVLFASLTTCDPSDINTTIETLK 536
++L LP RE + S TCDP D + ++ TL+
Sbjct: 142 KLLVTLPQQTEREFAYMRYSAATCDPQDFSKSLFTLR 178
>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 28.3 bits (60), Expect = 1.0
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 243 EEFFDQNPLSQLGL-IAMKNKRAEKITDLSGNVRKHIKAIQGLSNTPLTGEPSLQNTL 413
EE D + LS L I N ++ T G V I IQ TP + PSL+N+L
Sbjct: 55 EESDDDSLLSDLPEEIDSTNAQSNIATPSPGTVAAAISGIQPPPKTPSSDSPSLENSL 112
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 27.9 bits (59), Expect = 1.4
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 86 EDDPKEYRWETGYEKTWEAIKED 154
+ DP + W+ GY + W A+ D
Sbjct: 252 QSDPGDLPWDRGYSENWRAVMGD 274
>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 27.9 bits (59), Expect = 1.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 162 DWLKAWWLNLPRKQH 206
DW+ WWL+ KQH
Sbjct: 107 DWMYVWWLSYTAKQH 121
>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 442
Score = 25.8 bits (54), Expect = 5.5
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +3
Query: 384 TGEPSLQNTLELAGRILRPLPGHASRELLVLFASLTTCDPSDINTTIETLKTDGIRC 554
T P+L+++ + G I R ASR +L F S+ SD I K D I C
Sbjct: 131 TSTPTLEDSFDGNGFIQRKYVSDASRNVLRTFNSIL----SDRQQNINPSKKDAIFC 183
>SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 25.4 bits (53), Expect = 7.2
Identities = 19/65 (29%), Positives = 36/65 (55%)
Frame = +3
Query: 267 LSQLGLIAMKNKRAEKITDLSGNVRKHIKAIQGLSNTPLTGEPSLQNTLELAGRILRPLP 446
+S + L++ K + AE + + S +++ +K LS SLQ+ L+ + R++R +P
Sbjct: 77 ISNVLLLSCKPQAAEDVLN-SPKMKEALKGKLILSILAGKTISSLQSMLDESTRVIRIMP 135
Query: 447 GHASR 461
ASR
Sbjct: 136 NTASR 140
>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/78 (21%), Positives = 35/78 (44%)
Frame = +3
Query: 165 WLKAWWLNLPRKQHVKQXXXXXEKFVEEFFDQNPLSQLGLIAMKNKRAEKITDLSGNVRK 344
W+ +L P + +K+ +F D + + L +K EK ++ GN ++
Sbjct: 87 WVSGDYLFYPSRITAVSGFGANKKYTVQFLDYPDIETVSLKHIKAMPEEKRQEIEGN-KE 145
Query: 345 HIKAIQGLSNTPLTGEPS 398
+K + +TP+ EP+
Sbjct: 146 ILKKSTTIRSTPVR-EPT 162
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,368,832
Number of Sequences: 5004
Number of extensions: 43018
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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