Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26m23
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0464 - 25405629-25405665,25406644-25406710,25408112-254083...   145   2e-35
01_05_0722 + 24598426-24598649,24599113-24599219,24599319-245993...    28   5.6  
02_02_0490 - 10879761-10879861,10879946-10880185,10880274-108803...    28   7.5  
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026...    28   7.5  

>04_04_0464 -
           25405629-25405665,25406644-25406710,25408112-25408373,
           25408989-25409198,25409818-25410006,25410087-25410548,
           25410889-25410936,25411972-25412301
          Length = 534

 Score =  145 bits (352), Expect = 2e-35
 Identities = 67/141 (47%), Positives = 94/141 (66%)
 Frame = +3

Query: 231 EKFVEEFFDQNPLSQLGLIAMKNKRAEKITDLSGNVRKHIKAIQGLSNTPLTGEPSLQNT 410
           E F+ EFFDQNPLS +G++ MK+  + ++T++ G+    IKA+ G      +GEPSLQN 
Sbjct: 146 EVFIREFFDQNPLSHVGIVTMKDGISHRLTEIGGSPESQIKALMG--KLECSGEPSLQNA 203

Query: 411 LELAGRILRPLPGHASRELLVLFASLTTCDPSDINTTIETLKTDGIRCSVIGLAAEVRIC 590
           LEL    L  +P +  +E+L L+++L TCDP DI  TI   K   IRCSVIGLAAE+ IC
Sbjct: 204 LELVHGYLDQVPSYGHKEVLFLYSALNTCDPGDIMETIAKCKKSKIRCSVIGLAAEIFIC 263

Query: 591 KKMCQDTNGDYGVVLDDCHYQ 653
           K +C++T G Y V LD+ H++
Sbjct: 264 KYLCEETGGSYTVALDESHFK 284



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +2

Query: 110 WETGY--EKTWEAIKEDEDGLVESL 178
           WE  Y  +++WEA++EDE GL+  +
Sbjct: 44  WERAYADDRSWEALQEDESGLLRPI 68


>01_05_0722 +
           24598426-24598649,24599113-24599219,24599319-24599374,
           24599469-24599675,24599757-24599963,24600037-24600123,
           24600167-24600208,24600209-24600304,24600406-24600621,
           24600693-24600875,24601014-24601241
          Length = 550

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 25/78 (32%), Positives = 34/78 (43%)
 Frame = +3

Query: 243 EEFFDQNPLSQLGLIAMKNKRAEKITDLSGNVRKHIKAIQGLSNTPLTGEPSLQNTLELA 422
           E  FDQ P+S L L A+K+   EK+T +       I   + +     TG       L  A
Sbjct: 73  ETRFDQCPVSPLSLKAIKDAGYEKMTQVQEATLPIILQGEDVLAKAKTGTGKTVAFLLPA 132

Query: 423 GRILRPLPGHASRELLVL 476
             +L  LP   S  LLV+
Sbjct: 133 IELLSTLPRSPSINLLVI 150


>02_02_0490 - 10879761-10879861,10879946-10880185,10880274-10880337,
            10880426-10880731,10881098-10881312,10881417-10881711,
            10882193-10882357,10882477-10882527,10882657-10883109,
            10883195-10883281,10883736-10884800,10884858-10885376
          Length = 1186

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 459  RELLVLFASLTTCDPSDINTTIETLKTDGIRCSVIGLAAEV 581
            R++LVL  + ++ DP   N   +TLK     C+VI +A  +
Sbjct: 1099 RKILVLDEATSSVDPITDNLIQKTLKQQFFECTVITIAHRI 1139


>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
            18303723-18303836,18303903-18304046,18316147-18316312,
            18316396-18317130,18317219-18317422,18317496-18318177,
            18318272-18318528,18318604-18319298,18319345-18319382,
            18319847-18319928,18320018-18320112,18320443-18320526,
            18320601-18320891,18321521-18321853,18321948-18322150,
            18322243-18322399,18322482-18322585,18322675-18322835,
            18323511-18323824,18324317-18324589,18324666-18324967,
            18325459-18325549,18326140-18326190,18326700-18326768,
            18326926-18327017,18327082-18327148,18328582-18328746,
            18329027-18329103,18329572-18329766,18330208-18330275,
            18331081-18331172,18331399-18331522,18331608-18331705,
            18332384-18332997,18333620-18333626
          Length = 2892

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 89   DDPKEYRWETGYEKTWEA 142
            D  KEYR+E  Y+K W A
Sbjct: 2790 DVEKEYRYEISYDKAWRA 2807


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,741,654
Number of Sequences: 37544
Number of extensions: 260860
Number of successful extensions: 693
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)