Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26m23
(654 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z30094-1|CAA82910.1| 395|Homo sapiens basic transcripion factor... 173 3e-43
BC105980-1|AAI05981.1| 395|Homo sapiens DKFZP686P18101 protein ... 173 3e-43
BC065021-1|AAH65021.1| 395|Homo sapiens general transcription f... 173 3e-43
BC064557-1|AAH64557.1| 395|Homo sapiens LOC730394 protein protein. 173 3e-43
BT006773-1|AAP35419.1| 165|Homo sapiens general transcription f... 84 5e-16
BC005345-1|AAH05345.1| 165|Homo sapiens GTF2H2 protein protein. 84 5e-16
U21911-1|AAA64502.1| 130|Homo sapiens BTF2p44 protein. 65 2e-10
BC031301-1|AAH31301.1| 583|Homo sapiens leucine rich repeat con... 35 0.29
AL365330-3|CAI42528.1| 583|Homo sapiens leucine rich repeat con... 35 0.29
>Z30094-1|CAA82910.1| 395|Homo sapiens basic transcripion factor 2,
44 kD subunit protein.
Length = 395
Score = 173 bits (422), Expect = 3e-43
Identities = 79/141 (56%), Positives = 109/141 (77%)
Frame = +3
Query: 231 EKFVEEFFDQNPLSQLGLIAMKNKRAEKITDLSGNVRKHIKAIQGLSNTPLTGEPSLQNT 410
E FVEE+FDQNP+SQ+G+I K+KRAEK+T+LSGN RKHI +++ + GEPSL N+
Sbjct: 89 EYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHITSLKKAVDMTCHGEPSLYNS 148
Query: 411 LELAGRILRPLPGHASRELLVLFASLTTCDPSDINTTIETLKTDGIRCSVIGLAAEVRIC 590
L +A + L+ +PGH SRE+L++F+SLTTCDPS+I I+TLK IR SVIGL+AEVR+C
Sbjct: 149 LSIAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKTLKAAKIRVSVIGLSAEVRVC 208
Query: 591 KKMCQDTNGDYGVVLDDCHYQ 653
+ ++T G Y V+LD+ HY+
Sbjct: 209 TVLARETGGTYHVILDESHYK 229
Score = 44.8 bits (101), Expect = 3e-04
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +2
Query: 83 DEDDPKEYRWETGYEKTWEAIKEDEDGLVESLV 181
DE+ + RWE GYE+TWE +KEDE G +++ +
Sbjct: 2 DEEPERTKRWEGGYERTWEILKEDESGSLKATI 34
>BC105980-1|AAI05981.1| 395|Homo sapiens DKFZP686P18101 protein
protein.
Length = 395
Score = 173 bits (422), Expect = 3e-43
Identities = 79/141 (56%), Positives = 109/141 (77%)
Frame = +3
Query: 231 EKFVEEFFDQNPLSQLGLIAMKNKRAEKITDLSGNVRKHIKAIQGLSNTPLTGEPSLQNT 410
E FVEE+FDQNP+SQ+G+I K+KRAEK+T+LSGN RKHI +++ + GEPSL N+
Sbjct: 89 EYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHITSLKEAVDMTCHGEPSLYNS 148
Query: 411 LELAGRILRPLPGHASRELLVLFASLTTCDPSDINTTIETLKTDGIRCSVIGLAAEVRIC 590
L +A + L+ +PGH SRE+L++F+SLTTCDPS+I I+TLK IR SVIGL+AEVR+C
Sbjct: 149 LSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKTLKAAKIRVSVIGLSAEVRVC 208
Query: 591 KKMCQDTNGDYGVVLDDCHYQ 653
+ ++T G Y V+LD+ HY+
Sbjct: 209 TVLARETGGTYHVILDESHYK 229
Score = 44.8 bits (101), Expect = 3e-04
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +2
Query: 83 DEDDPKEYRWETGYEKTWEAIKEDEDGLVESLV 181
DE+ + RWE GYE+TWE +KEDE G +++ +
Sbjct: 2 DEEPERTKRWEGGYERTWEILKEDESGSLKATI 34
>BC065021-1|AAH65021.1| 395|Homo sapiens general transcription
factor IIH, polypeptide 2, 44kDa-like protein.
Length = 395
Score = 173 bits (422), Expect = 3e-43
Identities = 79/141 (56%), Positives = 109/141 (77%)
Frame = +3
Query: 231 EKFVEEFFDQNPLSQLGLIAMKNKRAEKITDLSGNVRKHIKAIQGLSNTPLTGEPSLQNT 410
E FVEE+FDQNP+SQ+G+I K+KRAEK+T+LSGN RKHI +++ + GEPSL N+
Sbjct: 89 EYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHITSLKEAVDMTCHGEPSLYNS 148
Query: 411 LELAGRILRPLPGHASRELLVLFASLTTCDPSDINTTIETLKTDGIRCSVIGLAAEVRIC 590
L +A + L+ +PGH SRE+L++F+SLTTCDPS+I I+TLK IR SVIGL+AEVR+C
Sbjct: 149 LSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKTLKAAKIRVSVIGLSAEVRVC 208
Query: 591 KKMCQDTNGDYGVVLDDCHYQ 653
+ ++T G Y V+LD+ HY+
Sbjct: 209 TVLARETGGTYHVILDESHYK 229
Score = 44.8 bits (101), Expect = 3e-04
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +2
Query: 83 DEDDPKEYRWETGYEKTWEAIKEDEDGLVESLV 181
DE+ + RWE GYE+TWE +KEDE G +++ +
Sbjct: 2 DEEPERTKRWEGGYERTWEILKEDESGSLKATI 34
>BC064557-1|AAH64557.1| 395|Homo sapiens LOC730394 protein protein.
Length = 395
Score = 173 bits (422), Expect = 3e-43
Identities = 79/141 (56%), Positives = 109/141 (77%)
Frame = +3
Query: 231 EKFVEEFFDQNPLSQLGLIAMKNKRAEKITDLSGNVRKHIKAIQGLSNTPLTGEPSLQNT 410
E FVEE+FDQNP+SQ+G+I K+KRAEK+T+LSGN RKHI +++ + GEPSL N+
Sbjct: 89 EYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHITSLKEAVDMTCHGEPSLYNS 148
Query: 411 LELAGRILRPLPGHASRELLVLFASLTTCDPSDINTTIETLKTDGIRCSVIGLAAEVRIC 590
L +A + L+ +PGH SRE+L++F+SLTTCDPS+I I+TLK IR SVIGL+AEVR+C
Sbjct: 149 LSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKTLKAAKIRVSVIGLSAEVRVC 208
Query: 591 KKMCQDTNGDYGVVLDDCHYQ 653
+ ++T G Y V+LD+ HY+
Sbjct: 209 TVLARETGGTYHVILDESHYK 229
Score = 44.8 bits (101), Expect = 3e-04
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +2
Query: 83 DEDDPKEYRWETGYEKTWEAIKEDEDGLVESLV 181
DE+ + RWE GYE+TWE +KEDE G +++ +
Sbjct: 2 DEEPERTKRWEGGYERTWEILKEDESGSLKATI 34
>BT006773-1|AAP35419.1| 165|Homo sapiens general transcription
factor IIH, polypeptide 2, 44kDa protein.
Length = 165
Score = 83.8 bits (198), Expect = 5e-16
Identities = 38/69 (55%), Positives = 53/69 (76%)
Frame = +3
Query: 231 EKFVEEFFDQNPLSQLGLIAMKNKRAEKITDLSGNVRKHIKAIQGLSNTPLTGEPSLQNT 410
E FVEE+FDQNP+SQ+G+I K+KRAEK+T+LSGN RKHI +++ + GEPSL N+
Sbjct: 89 EYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHITSLKKAVDMTCHGEPSLYNS 148
Query: 411 LELAGRILR 437
L +A + L+
Sbjct: 149 LSIAMQTLK 157
Score = 44.8 bits (101), Expect = 3e-04
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +2
Query: 83 DEDDPKEYRWETGYEKTWEAIKEDEDGLVESLV 181
DE+ + RWE GYE+TWE +KEDE G +++ +
Sbjct: 2 DEEPERTKRWEGGYERTWEILKEDESGSLKATI 34
>BC005345-1|AAH05345.1| 165|Homo sapiens GTF2H2 protein protein.
Length = 165
Score = 83.8 bits (198), Expect = 5e-16
Identities = 38/69 (55%), Positives = 53/69 (76%)
Frame = +3
Query: 231 EKFVEEFFDQNPLSQLGLIAMKNKRAEKITDLSGNVRKHIKAIQGLSNTPLTGEPSLQNT 410
E FVEE+FDQNP+SQ+G+I K+KRAEK+T+LSGN RKHI +++ + GEPSL N+
Sbjct: 89 EYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHITSLKKAVDMTCHGEPSLYNS 148
Query: 411 LELAGRILR 437
L +A + L+
Sbjct: 149 LSIAMQTLK 157
Score = 44.8 bits (101), Expect = 3e-04
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +2
Query: 83 DEDDPKEYRWETGYEKTWEAIKEDEDGLVESLV 181
DE+ + RWE GYE+TWE +KEDE G +++ +
Sbjct: 2 DEEPERTKRWEGGYERTWEILKEDESGSLKATI 34
>U21911-1|AAA64502.1| 130|Homo sapiens BTF2p44 protein.
Length = 130
Score = 64.9 bits (151), Expect = 2e-10
Identities = 28/42 (66%), Positives = 36/42 (85%)
Frame = +3
Query: 231 EKFVEEFFDQNPLSQLGLIAMKNKRAEKITDLSGNVRKHIKA 356
E FVEE+FDQNP+SQ+G+I K+KRAEK+T+LSGN RK I +
Sbjct: 89 EYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKXISS 130
Score = 44.8 bits (101), Expect = 3e-04
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +2
Query: 83 DEDDPKEYRWETGYEKTWEAIKEDEDGLVESLV 181
DE+ + RWE GYE+TWE +KEDE G +++ +
Sbjct: 2 DEEPERTKRWEGGYERTWEILKEDESGSLKATI 34
>BC031301-1|AAH31301.1| 583|Homo sapiens leucine rich repeat
containing 47 protein.
Length = 583
Score = 34.7 bits (76), Expect = 0.29
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = +3
Query: 306 AEKITDLSGNVRKHIKAIQGLSNTPLTGEPSLQNTLELAGRILRPLPGHASR 461
A ++ DLSGN + + QGL G P LQ +L L+G LR LP +R
Sbjct: 100 ALRVLDLSGNALEALPPGQGLGPAEPPGLPQLQ-SLNLSGNRLRELPADLAR 150
>AL365330-3|CAI42528.1| 583|Homo sapiens leucine rich repeat
containing 47 protein.
Length = 583
Score = 34.7 bits (76), Expect = 0.29
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = +3
Query: 306 AEKITDLSGNVRKHIKAIQGLSNTPLTGEPSLQNTLELAGRILRPLPGHASR 461
A ++ DLSGN + + QGL G P LQ +L L+G LR LP +R
Sbjct: 100 ALRVLDLSGNALEALPPGQGLGPAEPPGLPQLQ-SLNLSGNRLRELPADLAR 150
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,714,628
Number of Sequences: 237096
Number of extensions: 1515069
Number of successful extensions: 2838
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2838
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -