Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26m23
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z30662-4|CAA83139.3| 376|Caenorhabditis elegans Hypothetical pr... 138 2e-33
Z81130-10|CAB03418.1| 653|Caenorhabditis elegans Hypothetical p... 29 3.8
Z81130-9|CAI70413.1| 616|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 27 8.8
>Z30662-4|CAA83139.3| 376|Caenorhabditis elegans Hypothetical
protein T16H12.4 protein.
Length = 376
Score = 138 bits (335), Expect = 2e-33
Identities = 62/141 (43%), Positives = 102/141 (72%)
Frame = +3
Query: 231 EKFVEEFFDQNPLSQLGLIAMKNKRAEKITDLSGNVRKHIKAIQGLSNTPLTGEPSLQNT 410
+ F++ FF+QNP++Q+GLI K+++A+++T ++GN+R +++ L+ G+ SLQN
Sbjct: 93 QTFLDRFFEQNPIAQIGLITCKDRKADRLTMMTGNIRVLKESLNTLTEAFCGGDFSLQNA 152
Query: 411 LELAGRILRPLPGHASRELLVLFASLTTCDPSDINTTIETLKTDGIRCSVIGLAAEVRIC 590
L+LA L+ +PGH SRE++++ ++L+T DP +I +TIET+K IRCS IGL+AE+ +C
Sbjct: 153 LQLACANLKGMPGHVSREVVLVISALSTIDPGNIYSTIETMKRMNIRCSAIGLSAEMFVC 212
Query: 591 KKMCQDTNGDYGVVLDDCHYQ 653
K+M + T G+Y V LD H Q
Sbjct: 213 KEMAKATKGEYSVALDPDHLQ 233
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +2
Query: 83 DEDDPKEYRWETGYEKTW---EAIKEDEDGLVESLV 181
D+D+ K Y WE GY + + + EDE G +E +
Sbjct: 2 DDDEQKGYTWEAGYAEGLNINDVLVEDEGGSIEKSI 37
>Z81130-10|CAB03418.1| 653|Caenorhabditis elegans Hypothetical
protein T23G11.6a protein.
Length = 653
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 252 FDQNPLSQLGLIAMKNKRAEKITDLSGNVRKHIKAIQGLSNTPLTGEPSL 401
F N L LG+ KNK+ D+SGN I +I+ + PLT +L
Sbjct: 165 FSNNKLDSLGVDQFKNKKQLSYLDVSGN---FITSIEEKAFEPLTSLETL 211
>Z81130-9|CAI70413.1| 616|Caenorhabditis elegans Hypothetical
protein T23G11.6b protein.
Length = 616
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 252 FDQNPLSQLGLIAMKNKRAEKITDLSGNVRKHIKAIQGLSNTPLTGEPSL 401
F N L LG+ KNK+ D+SGN I +I+ + PLT +L
Sbjct: 165 FSNNKLDSLGVDQFKNKKQLSYLDVSGN---FITSIEEKAFEPLTSLETL 211
>Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical
protein F47B8.5 protein.
Length = 579
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 234 KFVEEFFDQNPLSQLGLIAMKNKRAEKITDL-SGNVRKHIKAIQGLSNTPLTGEPSLQNT 410
K ++ + + +LGLI +KNK +K+ L N +H G+ +TGE Q
Sbjct: 89 KLTKKCDEDAEIDKLGLITLKNKDEDKVAILPKNNDERHTFVTIGIGK-DITGEQRWQRK 147
Query: 411 LELAGR 428
+ G+
Sbjct: 148 MGKLGK 153
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 28.7 bits (61), Expect = 3.8
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = +3
Query: 315 ITDLSG-NVRKHIKAIQGLSNTPLTGEPSLQNTLELAGRILRPLPGHASRELLVLFASLT 491
+T++ G N +K++ I G +N P +P++ L I PLP ASR ++ +
Sbjct: 612 LTEMDGMNAKKNVFII-GATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRHQILKASLRK 670
Query: 492 TCDPSDINTTIETLKTDGIRCSVIGLAAEVRICKKMCQ 605
T D++ T T G + + IC++ C+
Sbjct: 671 TPLSKDLDLTFLAKNTVGFSGADL-----TEICQRACK 703
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 27.5 bits (58), Expect = 8.8
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = +3
Query: 315 ITDLSG-NVRKHIKAIQGLSNTPLTGEPSLQNTLELAGRILRPLPGHASRELLVLFASLT 491
+T++ G N +K++ I G +N P +P++ L I PLP ASR L +F +
Sbjct: 610 LTEMDGMNAKKNVFII-GATNRPDIIDPAVLRPGRLDQLIYIPLPDEASR--LQIFKASL 666
Query: 492 TCDPSDINTTIETLKTDGIRCSVIGLAAEVRICKKMCQ 605
P + + L + + S L IC++ C+
Sbjct: 667 RKTPLSADLDLNFLAKNTVGFSGADL---TEICQRACK 701
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 27.5 bits (58), Expect = 8.8
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = +3
Query: 315 ITDLSG-NVRKHIKAIQGLSNTPLTGEPSLQNTLELAGRILRPLPGHASRELLVLFASLT 491
+T++ G N +K++ I G +N P +P++ L I PLP ASR L +F +
Sbjct: 610 LTEMDGMNAKKNVFII-GATNRPDIIDPAVLRPGRLDQLIYIPLPDEASR--LQIFKASL 666
Query: 492 TCDPSDINTTIETLKTDGIRCSVIGLAAEVRICKKMCQ 605
P + + L + + S L IC++ C+
Sbjct: 667 RKTPLSADLDLNFLAKNTVGFSGADL---TEICQRACK 701
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,943,965
Number of Sequences: 27780
Number of extensions: 238254
Number of successful extensions: 614
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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