Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26l16
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    37   0.001
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    27   1.9  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    25   4.5  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   5.9  

>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 37.1 bits (82), Expect = 0.001
 Identities = 13/42 (30%), Positives = 29/42 (69%)
 Frame = +3

Query: 345 YSIPGILHFIQHEWARFQLERSPWEVDXAEXEARIAFLQGER 470
           Y++ G++ ++Q+E  + + + + WE++ AE + R+A L+ ER
Sbjct: 22  YTLQGVIQYLQYEAFKNERDHNLWEIERAELKIRVAQLERER 63


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 311 IIYTDSNLRSHLPSVVMRYGVIIHGCRDFHDMATITELNLSH 186
           ++Y+ S L   L S+    G++I G  + +D A ITE  + H
Sbjct: 261 MVYSSSKL-GLLDSIKAELGIVIDGKIESNDAADITEKEILH 301


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = -2

Query: 434 FCXVHLPW*SLQLESRPFVLDKMQNARY*ILNTLTGXFIXFIIYTDSNLRS--HLPSVVM 261
           F     PW   Q +S P+ +++    RY IL    G ++   +  +  L    H P+ V 
Sbjct: 101 FIATDYPWFLTQYDSYPYNIERADVVRYFILYKYGGIYLDLDVGCNRTLDPLLHYPAWVR 160

Query: 260 R 258
           R
Sbjct: 161 R 161


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 118 QTTSTDVPPSKIIFIDDFMNDKN 50
           Q     VPP ++  +DD+ N KN
Sbjct: 46  QIAKLSVPPHEMRVVDDYSNSKN 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,983
Number of Sequences: 5004
Number of extensions: 37852
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)