Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26l16
         (474 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0362 - 12973488-12974251,12975346-12975580,12976410-129767...    30   1.1  
07_03_1763 - 29316969-29318120                                         28   3.3  
12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-53...    28   4.4  
11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-45...    28   4.4  
05_03_0425 - 13808840-13809414,13809552-13809765,13810268-138113...    28   4.4  

>05_03_0362 -
           12973488-12974251,12975346-12975580,12976410-12976738,
           12977277-12977404,12977695-12977879,12977972-12978165,
           12978239-12978368,12978507-12978566,12979037-12979059,
           12979158-12979218,12979677-12979748,12979804-12979924,
           12980351-12980415,12980973-12981089,12981970-12982239
          Length = 917

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 454 KAIRASXSAWSTSHGDLSSWNLAHSCWIKCKMPGIEY 344
           +A RA+  AW    G+L   NL +SCW+     G+ +
Sbjct: 69  EAWRAAVDAWVERIGELMQNNLPYSCWLGTCFLGLTF 105


>07_03_1763 - 29316969-29318120
          Length = 383

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = -3

Query: 283 PTCPPL**DTELSSMAVGIFMTWPPLPN*TCHTPIITM 170
           P  P L  DT+   + VG     PPLPN  C  P ITM
Sbjct: 95  PHTPALVYDTDTGGLTVG-----PPLPNKLCGGPNITM 127


>12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-538255,
            538601-538860,539950-540073,540978-541310,541447-541531,
            541683-541768,541843-541941,542041-542180,542717-543043,
            543163-543774,543887-543971,543972-544067,544147-544500,
            544536-544559,544597-544707,544811-544894,545468-545546,
            546122-546279,546412-546528,546622-546780,546857-546939,
            547525-547627,549184-549495
          Length = 1925

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 275  PSVVMRYGVIIHGCRDFHDMATITEL 198
            P  V  +GV++ GC    DM T+ EL
Sbjct: 1543 PPDVRTFGVVVAGCMSAGDMGTVREL 1568


>11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-459581,
            459924-460183,461834-461918,462587-462919,463053-463137,
            463289-463374,463455-463556,463656-463795,464332-464658,
            464778-465389,465502-465586,465587-465682,465762-466115,
            466212-466322,466426-466509,467086-467164,467742-467899,
            468034-468150,468240-468398,468475-468557,469098-469200,
            470784-471080
          Length = 1899

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 275  PSVVMRYGVIIHGCRDFHDMATITEL 198
            P  V  +GV++ GC    DM T+ EL
Sbjct: 1518 PPDVRTFGVVVAGCMSAGDMGTVREL 1543


>05_03_0425 -
           13808840-13809414,13809552-13809765,13810268-13811317,
           13811616-13811687,13812075-13812334,13812647-13812731
          Length = 751

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 275 PSVVMRYGVIIHGCRDFHDMATITEL 198
           P  +  +GV++ GC    DM T+ EL
Sbjct: 399 PPDIRTFGVVVSGCMSAGDMGTVREL 424


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,950,504
Number of Sequences: 37544
Number of extensions: 239248
Number of successful extensions: 538
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)