Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26l16
         (474 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71181-10|CAA94901.2|  678|Caenorhabditis elegans Hypothetical p...    71   4e-13
Z71177-11|CAA94873.2|  678|Caenorhabditis elegans Hypothetical p...    71   4e-13
Z46676-5|CAA86667.3|  418|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U24189-2|AAC47513.1|  418|Caenorhabditis elegans actin-related p...    28   3.9  

>Z71181-10|CAA94901.2|  678|Caenorhabditis elegans Hypothetical
           protein K07C5.8 protein.
          Length = 678

 Score = 70.9 bits (166), Expect = 4e-13
 Identities = 31/56 (55%), Positives = 43/56 (76%)
 Frame = +3

Query: 306 NNKXNEXPSQSVQYSIPGILHFIQHEWARFQLERSPWEVDXAEXEARIAFLQGERK 473
           N+K  +  ++  QY++ GILHFIQHEW + +L+R+ WE + AE +ARIAFLQGERK
Sbjct: 12  NDKAKDETTRP-QYTMSGILHFIQHEWTKNELDRTRWEAERAEMQARIAFLQGERK 66


>Z71177-11|CAA94873.2|  678|Caenorhabditis elegans Hypothetical
           protein K07C5.8 protein.
          Length = 678

 Score = 70.9 bits (166), Expect = 4e-13
 Identities = 31/56 (55%), Positives = 43/56 (76%)
 Frame = +3

Query: 306 NNKXNEXPSQSVQYSIPGILHFIQHEWARFQLERSPWEVDXAEXEARIAFLQGERK 473
           N+K  +  ++  QY++ GILHFIQHEW + +L+R+ WE + AE +ARIAFLQGERK
Sbjct: 12  NDKAKDETTRP-QYTMSGILHFIQHEWTKNELDRTRWEAERAEMQARIAFLQGERK 66


>Z46676-5|CAA86667.3|  418|Caenorhabditis elegans Hypothetical
           protein C08B11.6 protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 474 PSSHLG-ERRSVPQXLXGPPPMVISPVGISPIRVG*NAKCP 355
           PS HLG ER ++P+ L  P  + I   G++   +    +CP
Sbjct: 261 PSIHLGVERFAIPEILFNPSDIDIDQCGVAEAVIESICQCP 301


>U24189-2|AAC47513.1|  418|Caenorhabditis elegans actin-related
           protein-like protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 474 PSSHLG-ERRSVPQXLXGPPPMVISPVGISPIRVG*NAKCP 355
           PS HLG ER ++P+ L  P  + I   G++   +    +CP
Sbjct: 261 PSIHLGVERFAIPEILFNPSDIDIDQCGVAEAVIESICQCP 301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,103,500
Number of Sequences: 27780
Number of extensions: 216268
Number of successful extensions: 436
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)