Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26l16
         (474 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   3.8  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   5.1  
AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.        21   6.7  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   8.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.9  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 145 YFILNSSWS*L**VCDKFSSVMVAMS*KSL 234
           Y ++N SWS    VCD + ++ V  S  S+
Sbjct: 245 YVLVNGSWSLPGFVCDFYIAMDVTCSTSSI 274


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 104 RCATI*NNFYRRFHE*QKLLHDGKKSLIDVRS 9
           RC+   N  YR+     + LH+ K+ L++ R+
Sbjct: 236 RCSRDRNREYRKKDRQYEKLHNEKEKLLEERT 267


>AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.
          Length = 62

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 308 IYTDSNLRSHLPSVVMRYGVIIHGCRDFHDM 216
           +YT+S  +S      +  G  I G   FH+M
Sbjct: 9   VYTNSLDQSKPVMFYVHEGAFISGTSSFHEM 39


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +3

Query: 9   RTDVDETFLSVMQ*FLSFMKSSIKIILDGGTSVDVV*KIVFNNV 140
           RT   E+ ++ +  +LSF++  + I+L  G  +  +  +  NN+
Sbjct: 37  RTQALESIIANIPTWLSFIRIVLVILLRAGYVLIHIGSVPVNNI 80


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = +1

Query: 400 WRDHHGRW 423
           W DHH +W
Sbjct: 62  WTDHHLKW 69


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 467 LTLEKGDPCLXFCXVH 420
           +T++KGD     C VH
Sbjct: 817 VTVKKGDTATLHCEVH 832


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 467 LTLEKGDPCLXFCXVH 420
           +T++KGD     C VH
Sbjct: 813 VTVKKGDTATLHCEVH 828


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,044
Number of Sequences: 438
Number of extensions: 2794
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)