Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26l13
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||...    27   1.7  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    26   4.0  
SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.2  
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   6.9  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    25   6.9  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    25   9.1  

>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 359 FRQHDETSSQPKLAFRRQKLEIQCAV 436
           F+ HDE ++ P L +R+ K  I C +
Sbjct: 47  FQCHDELNTHPFLPWRKAKFHIPCVI 72


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 238 CNCRTIKLNGMRSSKKIKRQ 179
           C C T+K NG+++ +KI RQ
Sbjct: 127 CMCCTVKDNGIKALEKIMRQ 146


>SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = -3

Query: 236 QLPY-DKIKRHALEQENKTPNALESCVLFYKDS--EIRITYNRGDYEIMHLRMSGP--LI 72
           Q+ Y ++ ++  LE EN+  N      L    S  E+R+ +NR ++ + +  +SGP  + 
Sbjct: 62  QVKYTEEQEKEVLEVENRLQNLKIVKDLRQNPSFRELRMPFNRSNHSLTNNLLSGPGRIT 121

Query: 71  QPNTIYY 51
            P  I+Y
Sbjct: 122 VPPVIFY 128


>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = -3

Query: 509 FPRVNKRFVFGNLPAAIVNNETKQKLRIGSPIFAGEKLVSVVTTFHRVGENEWLLPVTGI 330
           +P  ++  + G+L + I + ++++      PI A EK  S+ +  H    +        I
Sbjct: 164 YPYKDRNIMLGDLASRIPSKDSEKLDEERQPI-ALEKTKSLDSISHSSSSSRKSSTELKI 222

Query: 329 QEA-SRLSGHIKVPNGVRVEKLRPNMSV 249
               +R+   I VP+ V+  + RPN S+
Sbjct: 223 PPVETRIVAEIPVPSSVKRRRHRPNKSM 250


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 155 FYKDSEIRITYNRGDYEIMHLRMSGPLIQPNTIYYS*IRIIIKLFVY 15
           F   SE  +  N  DY  ++L +    + P+ +YY+ I+   + F+Y
Sbjct: 259 FLTSSETDVPKNINDY--IYLLIDDRFVPPDRVYYTDIKHHFRKFLY 303


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 87  VRTFNSTQHNILQLNKNYY 31
           +R  +S +H ILQ+NKN Y
Sbjct: 188 IRIRSSYEHLILQINKNIY 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,673,605
Number of Sequences: 5004
Number of extensions: 56802
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)