Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26l13
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0896 + 25753377-25754325,25755081-25755691 32 0.33
05_07_0089 - 27619053-27620138 30 1.3
12_02_0235 + 16079042-16079410 29 2.3
02_01_0690 - 5152224-5152386,5152490-5152687,5152815-5153014,515... 29 2.3
08_01_0612 + 5378190-5378251,5378926-5379244,5379381-5379671,538... 29 4.1
01_06_0078 + 26223797-26223803,26224000-26224278,26224391-262246... 29 4.1
05_04_0045 - 17477470-17477570,17477753-17477774,17477942-174780... 28 5.4
11_06_0251 - 21707953-21708455,21709230-21710284,21711187-21711299 27 9.4
01_01_0601 - 4476261-4476728 27 9.4
>06_03_0896 + 25753377-25754325,25755081-25755691
Length = 519
Score = 32.3 bits (70), Expect = 0.33
Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Frame = +3
Query: 297 LYVSRQPRRFLNSRHR*QPFVFANTMKRRHNRN*LFAGKNWRSNAQFLLCFIIHDCRWQI 476
+ VSR PRR RHR + F F + + H N +G++ LL C
Sbjct: 236 MVVSRMPRRM--RRHREEVFAFLDAIIAEHQEN-RASGEDEEDLLDVLLRIQREGCMEST 292
Query: 477 AKHKAFIDTWKLKQVFSSFNGSK--LPSSLKTLIIVFNTSC 593
H+ D K N SK LPS L F+T C
Sbjct: 293 VIHRIHQDNNWRKYSHEHTNNSKKRLPSKLAKSYHGFSTKC 333
>05_07_0089 - 27619053-27620138
Length = 361
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -2
Query: 402 KASFGCDDVSSCWRKRMAATGDGNSRSVSAVGTHKGAERRPC 277
+A F C S+C ++ T N+ V+ +G KG PC
Sbjct: 24 RALFSCGIFSTCTHPALSPTATPNNNVVAGMGGAKGGSGTPC 65
>12_02_0235 + 16079042-16079410
Length = 122
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -2
Query: 408 RRKASFGCDDVSSCWRKRMAATGDGNSRSVSAVGTHKGAERR 283
+RKA G D + MAA +G S V +G H+ AERR
Sbjct: 40 QRKAGTGGDGSE---KTMMAARAEGGSNWVEVIGCHEKAERR 78
>02_01_0690 -
5152224-5152386,5152490-5152687,5152815-5153014,
5153122-5153223,5153414-5153550,5153688-5153798,
5156092-5156344,5157954-5158052,5158449-5158739
Length = 517
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 329 EFPSPVAAIRFRQHDETSSQPKLAFRRQKLEIQCAVFALFH 451
E PS A RF+QH S P FR+ +EI+ ++ H
Sbjct: 301 ELPSTFKAFRFQQH-RWSCGPANLFRKMLMEIKVTIWKKIH 340
>08_01_0612 +
5378190-5378251,5378926-5379244,5379381-5379671,
5380520-5380768,5380843-5380967,5381487-5381585,
5381668-5382352
Length = 609
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 323 ASRLSGHIKVPNGVRVEKLRPNMSVYGTVQLPYDKI 216
AS + G K ++ + L+PN+ VYGT+ Y K+
Sbjct: 400 ASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKL 435
>01_06_0078 +
26223797-26223803,26224000-26224278,26224391-26224609,
26226846-26226917,26228073-26228221,26228859-26229135,
26230922-26231187
Length = 422
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = -3
Query: 422 SPIFAGEKLVSVVTTFHRVGENEWLLPVTGIQEASRLSGHIKVPNGVRVEKLRPNMSVYG 243
SP F E+ V V T H E W + G+ L+GH N + PN +++G
Sbjct: 131 SPDFYRERGVHVRDTVHLDMEMNWFRDLLGLLCPDDLAGHNLFEN--EENFINPNRTIHG 188
Query: 242 T 240
T
Sbjct: 189 T 189
>05_04_0045 -
17477470-17477570,17477753-17477774,17477942-17478017,
17478288-17478397,17478674-17478743,17478847-17479178
Length = 236
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 402 KASFG-CDDVSSCWRKRMAATGDGNSRSVSAVG 307
KAS+ DD S W R+AA + +S S SA G
Sbjct: 66 KASWSVADDEESRWLDRLAADAESSSSSASAAG 98
>11_06_0251 - 21707953-21708455,21709230-21710284,21711187-21711299
Length = 556
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/55 (21%), Positives = 26/55 (47%)
Frame = -1
Query: 634 YHQFPGVVSSIIFTQLVLNTIISVLSEDGSLLPLKLENTCFNFHVSINALCLAIC 470
Y P ++ + + Q +NT++S+ + P+++ + VSI C +C
Sbjct: 166 YRDLPRLLQEVDYGQKGINTLLSLEETYADITPVRISDNSVTAFVSIMRGCNNMC 220
>01_01_0601 - 4476261-4476728
Length = 155
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 357 RMAATGDGNSRSVSAVGTHKGAERR 283
R AA G+G S G H+GA RR
Sbjct: 66 REAARGNGGSEGEGGGGAHRGARRR 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,937,897
Number of Sequences: 37544
Number of extensions: 355185
Number of successful extensions: 944
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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