Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26l07
(584 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0144 - 25973635-25973801,25973878-25973947,25974049-259741... 42 3e-04
01_01_0885 + 6966700-6966979,6967930-6968110,6968224-6968365,696... 42 5e-04
03_02_0927 - 12452262-12452428,12452538-12452607,12452689-124528... 41 6e-04
06_03_0181 + 17618888-17619125,17621503-17621683,17621765-176219... 38 0.004
01_06_0631 + 30732091-30732292,30732690-30732870,30732994-307331... 38 0.008
03_06_0184 - 32188778-32188947,32189104-32189173,32189332-321894... 36 0.024
02_02_0367 + 9496893-9497022,9498262-9498442,9498519-9498660,949... 35 0.041
05_07_0022 - 27103367-27103533,27103783-27103852,27104074-271042... 34 0.096
04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018... 33 0.13
01_01_0255 + 2079112-2079196,2079334-2079514,2079712-2079853,207... 32 0.39
03_01_0347 - 2730242-2730425,2730541-2730692,2730782-2730940,273... 29 2.7
05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241 29 3.6
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 28 4.8
01_06_0336 + 28533251-28533350,28533548-28533641,28533760-285339... 28 4.8
10_01_0017 - 218188-218261,219262-219379,220348-220932,220996-22... 27 8.3
07_01_0983 + 8287866-8287871,8289353-8289583,8289647-8290408 27 8.3
>05_06_0144 -
25973635-25973801,25973878-25973947,25974049-25974190,
25974647-25974827,25975248-25975443
Length = 251
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +2
Query: 383 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDA 559
LR + DL L V LW L+ +G+C N +TL + ++ L+T+P YE + Q+DA
Sbjct: 159 LREIGQGHDLKKFLIVVVGLWVLSVLGSCCNFLTLFYIVFMVLYTVPVLYEKYEDQIDA 217
>01_01_0885 +
6966700-6966979,6967930-6968110,6968224-6968365,
6968448-6968517,6968617-6968783
Length = 279
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/59 (33%), Positives = 35/59 (59%)
Frame = +2
Query: 383 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDA 559
LR++ L D+ L LW L+ +G+C N +TL+ + ++ L T+P YE + Q+D+
Sbjct: 187 LRQIALGRDIKKFLIVIAGLWLLSVLGSCCNFLTLVYIVFVVLHTVPILYEKYEDQIDS 245
>03_02_0927 -
12452262-12452428,12452538-12452607,12452689-12452830,
12452937-12453117,12454068-12454203
Length = 231
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +2
Query: 434 VLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 556
+LLW L+ +G + ITL G IAL T+P Y N+ QVD
Sbjct: 156 LLLWLLSVIGNFCSSITLAYFGTIALVTIPALYSKNQEQVD 196
>06_03_0181 +
17618888-17619125,17621503-17621683,17621765-17621906,
17622002-17622071,17622162-17622307,17623382-17623948,
17624558-17624641,17624723-17624797,17625049-17625217,
17625395-17625586,17625662-17626053
Length = 751
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +2
Query: 386 RRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 556
R + L DL L V LW L+ VG+C + +TLI + + L T+P Y+ + +VD
Sbjct: 174 REIALGHDLKKFLGVIVALWVLSEVGSCCDFLTLIYVAVLMLHTVPILYDKYQDKVD 230
>01_06_0631 +
30732091-30732292,30732690-30732870,30732994-30733135,
30733228-30733297,30733383-30733549
Length = 253
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = +2
Query: 440 LWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDA 559
LW L+ +G+ N +TL + ++AL+T+P YE + +VDA
Sbjct: 180 LWILSVLGSSCNFLTLFYIVFVALYTVPVLYEKYEDKVDA 219
>03_06_0184 -
32188778-32188947,32189104-32189173,32189332-32189473,
32189559-32189739,32189857-32190051,32190782-32190795,
32190815-32190864,32191493-32191519
Length = 282
Score = 35.9 bits (79), Expect = 0.024
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 440 LWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 556
LW +G N +T+I +G+++ TLP YE + QVD
Sbjct: 208 LWAAAVIGGWCNFLTVIYIGFVSAHTLPVLYEKYEDQVD 246
>02_02_0367 +
9496893-9497022,9498262-9498442,9498519-9498660,
9498757-9498826,9498920-9499089
Length = 230
Score = 35.1 bits (77), Expect = 0.041
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Frame = +2
Query: 383 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD-- 556
LR + L DL+ L V LW L+ +G+ + +TL + + L T+P Y + +VD
Sbjct: 137 LREISLGHDLMKFLGVIVALWILSEIGSLCDFLTLFYVAVLMLHTVPILYHKYQDKVDHF 196
Query: 557 ---ANLELAR 577
A++EL+R
Sbjct: 197 AGKAHVELSR 206
>05_07_0022 -
27103367-27103533,27103783-27103852,27104074-27104215,
27104372-27104552,27104654-27104756
Length = 220
Score = 33.9 bits (74), Expect = 0.096
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 440 LWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 556
LW L +G + TL+ +G++ TLP YE + +VD
Sbjct: 147 LWILAVIGETCSFTTLLYVGFLCALTLPALYERYETEVD 185
>04_04_1534 +
34200538-34200589,34200677-34200857,34201701-34201842,
34201963-34202032,34202169-34202302
Length = 192
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +2
Query: 422 LKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARA 580
+K ++LW ++Y+G FN +TLI + +P YE + QVD + +A +
Sbjct: 124 IKVILILWVVSYIGMLFNFLTLI-------YIVPPLYEKYQDQVDEKIGMAHS 169
>01_01_0255 +
2079112-2079196,2079334-2079514,2079712-2079853,
2079934-2080003,2080140-2080303
Length = 213
Score = 31.9 bits (69), Expect = 0.39
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +2
Query: 440 LWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 556
L+ + + +CF+ +TL+ L + TLP YE +++VD
Sbjct: 141 LFIASVIASCFSSLTLLYLVVLGTMTLPVMYENYESEVD 179
>03_01_0347 -
2730242-2730425,2730541-2730692,2730782-2730940,
2734144-2734618,2734713-2734775,2734870-2735078
Length = 413
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 428 FGVLLWCLTYVGACFNGITLIILGW 502
FG+ WC+ Y G NG T+ W
Sbjct: 292 FGLKFWCIVYSGFACNGFTVFAQLW 316
>05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241
Length = 1445
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/59 (32%), Positives = 24/59 (40%)
Frame = +1
Query: 400 GGGPGGLAEVRRAAVVPHVRGGVLQRDHAHHPRLDSAVHAAEGLRNEQGASGRQPRAGA 576
GGG G A V+R VVP G V R + + E+ S R+ R GA
Sbjct: 52 GGGGGAAAAVKRRVVVP---GAVATRTRSRRMAMAQQAPVTPPAAAEEAPSRRRKRKGA 107
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 400 GGGPGGLAEVRRAAVVPHVRGGVLQRDHAHHPRLDS 507
GG GG A+ R + HV G V Q HHP+L S
Sbjct: 292 GGSAGGGADGSRYWLAIHVVGVVRQTFTNHHPKLCS 327
>01_06_0336 +
28533251-28533350,28533548-28533641,28533760-28533901,
28534107-28534212,28534345-28534511
Length = 202
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +2
Query: 380 ELRRLFLV---EDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQ 550
+L+R L +V +K L L+ +G+ + +L+ +G++ TLP Y+ K +
Sbjct: 106 DLKRFLLFWTNNQIVYDIKVVGSLLVLSAIGSSCSLTSLLYIGFLCAHTLPVLYQRYKTE 165
Query: 551 VD 556
VD
Sbjct: 166 VD 167
>10_01_0017 -
218188-218261,219262-219379,220348-220932,220996-221163,
221331-221333
Length = 315
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 490 HPRLDSAVHAAEGLRNEQGASGRQPRAG 573
H RLD A+ +AEGLR ++ R R G
Sbjct: 88 HLRLDIAIESAEGLRYMHSSTNRTIRHG 115
>07_01_0983 + 8287866-8287871,8289353-8289583,8289647-8290408
Length = 332
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 490 HPRLDSAVHAAEGLRNEQGASGRQPRAG 573
H RLD A+ +AEGLR ++ R R G
Sbjct: 110 HLRLDIAIESAEGLRYMHSSTNRTIRHG 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,050,225
Number of Sequences: 37544
Number of extensions: 154078
Number of successful extensions: 799
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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