Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26l06
         (307 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0151 - 13229861-13230347,13230442-13230540,13230701-132309...    27   2.2  
07_01_0687 - 5197349-5198665                                           26   6.7  
01_05_0108 + 18183250-18183336,18183451-18183962,18184074-181842...    26   6.7  
01_07_0337 + 42838260-42838344,42838972-42839084,42839652-428397...    25   8.9  

>01_03_0151 -
           13229861-13230347,13230442-13230540,13230701-13230918,
           13231210-13231317,13231366-13231518,13232962-13233015,
           13233276-13233374,13234458-13234551,13234638-13234715,
           13237696-13237766,13238321-13238416,13238505-13238582,
           13238683-13238751,13238830-13238897,13239038-13239115,
           13239190-13239289,13240002-13240061,13240488-13240579,
           13241730-13241779,13241870-13241954,13242035-13242134,
           13242933-13243013,13244827-13244907
          Length = 832

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +1

Query: 79  YNEIMNNIXNLIDRELGLHCRFNYDTVLKRLVVNSEESFY 198
           YN + + +  L++    +H + NY   LK+L++ + ESF+
Sbjct: 506 YNMLQSGVLELLEYIRKVHVQ-NYQEGLKQLIIYANESFW 544


>07_01_0687 - 5197349-5198665
          Length = 438

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -1

Query: 283 HSQMF-QQIYKRISEDPVQNLRQHLRIGARKTIPRC 179
           H++ F +Q+++ +S D  ++ R H+R  A+K +P C
Sbjct: 192 HNKQFPEQLFEILSLD--ESSRYHMRWRAKKALPMC 225


>01_05_0108 +
           18183250-18183336,18183451-18183962,18184074-18184245,
           18184984-18185022,18185117-18185185,18185281-18185397,
           18185842-18186056,18187085-18187240,18187328-18187527,
           18187927-18188084,18188321-18188417,18188738-18188829,
           18189018-18189191
          Length = 695

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +2

Query: 182 ARNRFTGSNPQMLSQILNRILRYSLVDLLKHLAMNS 289
           A N     N +++   L +++RY+++ LLK+L  +S
Sbjct: 509 AGNDIVQGNKKLILAFLWQLMRYNILQLLKNLRFHS 544


>01_07_0337 +
           42838260-42838344,42838972-42839084,42839652-42839729,
           42839831-42840054,42840084-42840128,42840156-42840264
          Length = 217

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 112 IDRELGLHCRFNYDTVLKRLVVNSEESFYGLQSSNVVANFEQDP 243
           I R++G H R  +  +LKR   +   S +   S+N    FE  P
Sbjct: 75  IGRDMGAHFRVQHSHLLKRRKPSRPSSSWPTPSNNSDPYFEGPP 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,886,398
Number of Sequences: 37544
Number of extensions: 112493
Number of successful extensions: 246
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)