Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26l06
         (307 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50191-2|AAK31556.2|  335|Caenorhabditis elegans Dumpy : shorter...    29   0.85 
U41991-5|AAA83345.3|  345|Caenorhabditis elegans Seven tm recept...    29   0.85 
L12692-1|AAA17395.2|  356|Caenorhabditis elegans collagen protein.     29   0.85 
U50191-1|AAO38600.2|  372|Caenorhabditis elegans Dumpy : shorter...    28   1.5  
U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical pr...    26   4.5  
Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical pr...    25   7.9  
Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical pr...    25   7.9  
Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical pr...    25   7.9  
Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical pr...    25   7.9  

>U50191-2|AAK31556.2|  335|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 10, isoform a protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 43  SFKLLNV*LPLIYNEIMNNIXNLIDRELGLHCRFNYDTVLK 165
           SF ++ V LP++YN + N I   +DRE+    R N +  L+
Sbjct: 17  SFIIVCVALPIMYNHVQNTI-TYVDREMAYCERSNDEAALE 56


>U41991-5|AAA83345.3|  345|Caenorhabditis elegans Seven tm receptor
           protein 1 protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 285 FIARCFSKSTSEYRRILFKICDN 217
           F+ +C+ K+  +Y  ILF  C N
Sbjct: 302 FVVKCYRKAVIKYLNILFSFCSN 324


>L12692-1|AAA17395.2|  356|Caenorhabditis elegans collagen protein.
          Length = 356

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 43  SFKLLNV*LPLIYNEIMNNIXNLIDRELGLHCRFNYDTVLK 165
           SF ++ V LP++YN + N I   +DRE+    R N +  L+
Sbjct: 38  SFIIVCVALPIMYNHVQNTI-TYVDREMAYCERSNDEAALE 77


>U50191-1|AAO38600.2|  372|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 10, isoform b protein.
          Length = 372

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 43  SFKLLNV*LPLIYNEIMNNIXNLIDRELG-LHCRFNYDTVLK 165
           SF ++ V LP++YN + N I   +DRE+     RF Y   +K
Sbjct: 38  SFIIVCVALPIMYNHVQNTI-TYVDREMAYCEVRFLYFYCIK 78


>U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical protein
            F59A3.2a protein.
          Length = 975

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 265  QIYKRISEDPVQNLRQHLRIGARKTIPR 182
            Q+ K  + DP+   R  L  G +KTI R
Sbjct: 947  QLQKNNNNDPISQQRPQLSFGTQKTIQR 974


>Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 118 RELGLHCRFNYDTVLKRLVV--NSEESFYGLQSSN 216
           RE+  +C  N D VLKRL V  + EE   G++  +
Sbjct: 488 REIQTYCDRNKDDVLKRLTVTFDDEEGDSGVEKKD 522


>Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 118 RELGLHCRFNYDTVLKRLVV--NSEESFYGLQSSN 216
           RE+  +C  N D VLKRL V  + EE   G++  +
Sbjct: 493 REIQTYCDRNKDDVLKRLTVTFDDEEGDSGVEKKD 527


>Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 118 RELGLHCRFNYDTVLKRLVV--NSEESFYGLQSSN 216
           RE+  +C  N D VLKRL V  + EE   G++  +
Sbjct: 488 REIQTYCDRNKDDVLKRLTVTFDDEEGDSGVEKKD 522


>Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 118 RELGLHCRFNYDTVLKRLVV--NSEESFYGLQSSN 216
           RE+  +C  N D VLKRL V  + EE   G++  +
Sbjct: 493 REIQTYCDRNKDDVLKRLTVTFDDEEGDSGVEKKD 527


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,137,832
Number of Sequences: 27780
Number of extensions: 103008
Number of successful extensions: 232
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)