Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26l06
         (307 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   1.1  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   2.0  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   3.4  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   4.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   4.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   7.9  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -2

Query: 276 RCFSKSTSEYRRILFKICDNI*GLEPVKRFLAVHH*PLQYRIVIKPAMETEF 121
           R +   TS Y  +L  +  +I      +R+LA++H    YR  +K A+ + F
Sbjct: 110 RAYVSETSSYVSVLTIVAFSI------ERYLAIYHPLRHYRSGLKRAIRSIF 155


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -1

Query: 259 YKRISEDPVQNLRQHLRIGARKTIPRCSPLAASVPYRN*TGNGDRVHDRSNXVYYS 92
           Y+  S++  +N  +  R    K I   +PL+ +  Y N   N ++ H+  N +YY+
Sbjct: 59  YRETSKERSRNRTERERSKEPKIISNNNPLSNNYNYNNNYNNYNK-HN-YNKLYYN 112


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 1   GLTCFVQEVCR 33
           GLTC +QEV +
Sbjct: 118 GLTCMIQEVLK 128


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 235 VQNLRQHLRIGARKTIPRCSPLAA 164
           V NLR+HLR+   +    C   AA
Sbjct: 50  VANLRRHLRVHTGERPYACELCAA 73


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 286 VHSQMFQQIYKRI 248
           VH  +F Q+YK++
Sbjct: 429 VHDPVFYQLYKKV 441


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -1

Query: 259 YKRISEDPVQNLRQHLRIGARKTIPR 182
           YK I ED  +++       +  T+PR
Sbjct: 416 YKNIREDDARHIPHASVTDSENTVPR 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,602
Number of Sequences: 438
Number of extensions: 1325
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)