Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26l04
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1032 + 27029698-27029785,27030640-27031275,27031739-270319...    30   1.4  
08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817           29   3.1  
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211...    28   7.2  

>06_03_1032 +
           27029698-27029785,27030640-27031275,27031739-27031993,
           27032451-27032605,27032704-27032783,27032891-27033026,
           27033228-27033377,27033474-27033641
          Length = 555

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +2

Query: 383 PENTAVIMAVAKTALQIRLPPLPSIKDVIKLYKLRALRE-LSQNFLMEPRLIDKIVRASG 559
           PE  A I+AVA   +       PS+K V++   L+  RE L    +  P+L+  ++  SG
Sbjct: 474 PEEMAHILAVASMCIHHSSSSRPSMKSVVRF--LKGDRESLEMMQMQRPKLMKPLMFDSG 531

Query: 560 NIQNHT 577
           + +++T
Sbjct: 532 DSEDYT 537


>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
          Length = 958

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 170 WYSTRSSAQAGRNSLYEINR-REKSRTRSKITSDFETQSTDWLHDRSRSVG 319
           W  +R +    R+    I R R +SR+RS+ +  F  + ++W  +RSRS G
Sbjct: 180 WNRSRRNRSRSRSRSRSIGRGRGRSRSRSR-SPYFSDRGSEWRVERSRSSG 229


>03_01_0273 -
           2107778-2108772,2108857-2109043,2109121-2110575,
           2110670-2111251
          Length = 1072

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +3

Query: 327 LYSIFAIKQETF-LDDFDEPPKIQQ*SWPSL 416
           L +IF +K+ET  LD+ DE  ++ + +WP+L
Sbjct: 320 LQAIFDLKEETVVLDEVDELLELMRRTWPTL 350


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,364,689
Number of Sequences: 37544
Number of extensions: 317351
Number of successful extensions: 759
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)