Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26l04
         (642 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF151833-1|AAD34070.1|  346|Homo sapiens CGI-75 protein protein.       71   5e-12
BC017788-1|AAH17788.1|  346|Homo sapiens transcription factor B1...    70   6e-12
BC005183-1|AAH05183.1|  341|Homo sapiens Unknown (protein for IM...    70   6e-12
AL139101-2|CAI20506.1|  346|Homo sapiens transcription factor B1...    70   6e-12
BC002698-1|AAH02698.1|  106|Homo sapiens coiled-coil domain cont...    41   0.003

>AF151833-1|AAD34070.1|  346|Homo sapiens CGI-75 protein protein.
          Length = 346

 Score = 70.5 bits (165), Expect = 5e-12
 Identities = 35/67 (52%), Positives = 46/67 (68%)
 Frame = +2

Query: 404 MAVAKTALQIRLPPLPSIKDVIKLYKLRALRELSQNFLMEPRLIDKIVRASGNIQNHTVC 583
           MA +      RLPPLP+I+++IKL +L+A  ELSQNFL++ RL DKIVR +GN+ N  V 
Sbjct: 1   MAASGKLSTCRLPPLPTIREIIKLLRLQAANELSQNFLLDLRLTDKIVRKAGNLTNAYVY 60

Query: 584 ESWTRPG 604
           E    PG
Sbjct: 61  EVGPGPG 67



 Score = 31.1 bits (67), Expect = 3.5
 Identities = 12/14 (85%), Positives = 14/14 (100%)
 Frame = +3

Query: 585 KVGPGPGGITRSII 626
           +VGPGPGGITRSI+
Sbjct: 61  EVGPGPGGITRSIL 74


>BC017788-1|AAH17788.1|  346|Homo sapiens transcription factor B1,
           mitochondrial protein.
          Length = 346

 Score = 70.1 bits (164), Expect = 6e-12
 Identities = 34/67 (50%), Positives = 47/67 (70%)
 Frame = +2

Query: 404 MAVAKTALQIRLPPLPSIKDVIKLYKLRALRELSQNFLMEPRLIDKIVRASGNIQNHTVC 583
           MA +      RLPPLP+I+++IKL +L+A ++LSQNFL++ RL DKIVR +GN+ N  V 
Sbjct: 1   MAASGKLSTCRLPPLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVY 60

Query: 584 ESWTRPG 604
           E    PG
Sbjct: 61  EVGPGPG 67



 Score = 31.1 bits (67), Expect = 3.5
 Identities = 12/14 (85%), Positives = 14/14 (100%)
 Frame = +3

Query: 585 KVGPGPGGITRSII 626
           +VGPGPGGITRSI+
Sbjct: 61  EVGPGPGGITRSIL 74


>BC005183-1|AAH05183.1|  341|Homo sapiens Unknown (protein for
           IMAGE:4041141) protein.
          Length = 341

 Score = 70.1 bits (164), Expect = 6e-12
 Identities = 34/67 (50%), Positives = 47/67 (70%)
 Frame = +2

Query: 404 MAVAKTALQIRLPPLPSIKDVIKLYKLRALRELSQNFLMEPRLIDKIVRASGNIQNHTVC 583
           MA +      RLPPLP+I+++IKL +L+A ++LSQNFL++ RL DKIVR +GN+ N  V 
Sbjct: 1   MAASGKLSTCRLPPLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVY 60

Query: 584 ESWTRPG 604
           E    PG
Sbjct: 61  EVGPGPG 67



 Score = 31.1 bits (67), Expect = 3.5
 Identities = 12/14 (85%), Positives = 14/14 (100%)
 Frame = +3

Query: 585 KVGPGPGGITRSII 626
           +VGPGPGGITRSI+
Sbjct: 61  EVGPGPGGITRSIL 74


>AL139101-2|CAI20506.1|  346|Homo sapiens transcription factor B1,
           mitochondrial protein.
          Length = 346

 Score = 70.1 bits (164), Expect = 6e-12
 Identities = 34/67 (50%), Positives = 47/67 (70%)
 Frame = +2

Query: 404 MAVAKTALQIRLPPLPSIKDVIKLYKLRALRELSQNFLMEPRLIDKIVRASGNIQNHTVC 583
           MA +      RLPPLP+I+++IKL +L+A ++LSQNFL++ RL DKIVR +GN+ N  V 
Sbjct: 1   MAASGKLSTCRLPPLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVY 60

Query: 584 ESWTRPG 604
           E    PG
Sbjct: 61  EVGPGPG 67



 Score = 31.1 bits (67), Expect = 3.5
 Identities = 12/14 (85%), Positives = 14/14 (100%)
 Frame = +3

Query: 585 KVGPGPGGITRSII 626
           +VGPGPGGITRSI+
Sbjct: 61  EVGPGPGGITRSIL 74


>BC002698-1|AAH02698.1|  106|Homo sapiens coiled-coil domain
           containing 56 protein.
          Length = 106

 Score = 41.1 bits (92), Expect = 0.003
 Identities = 18/38 (47%), Positives = 26/38 (68%)
 Frame = +3

Query: 276 RNRLTGFTIGAGVLGVYLYSIFAIKQETFLDDFDEPPK 389
           RN +TG  IGA VL +Y Y+ ++I QE FLD+ ++  K
Sbjct: 56  RNIVTGLGIGALVLAIYGYTFYSISQERFLDELEDEAK 93


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,909,118
Number of Sequences: 237096
Number of extensions: 1608946
Number of successful extensions: 3562
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3562
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)