Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26l04
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88169-5|AAB42235.2|  367|Caenorhabditis elegans Hypothetical pr...    53   2e-07
U29381-1|AAA68751.2|  133|Caenorhabditis elegans Hypothetical pr...    48   6e-06
U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical p...    31   0.70 
AC024791-21|AAF60666.1|  749|Caenorhabditis elegans Rnp (rrm rna...    28   4.9  
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    28   6.5  
U64856-1|AAB04985.2|  429|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U88169-5|AAB42235.2|  367|Caenorhabditis elegans Hypothetical
           protein T03F1.7 protein.
          Length = 367

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 27/67 (40%), Positives = 40/67 (59%)
 Frame = +2

Query: 434 RLPPLPSIKDVIKLYKLRALRELSQNFLMEPRLIDKIVRASGNIQNHTVCESWTRPGWNN 613
           RLPPLP+++D I +Y+LRA + LSQN+LM+  +  KI + +  I+   V E    PG   
Sbjct: 6   RLPPLPALRDFIHMYRLRAKKILSQNYLMDMNITRKIAKHAKVIEKDWVIEIGPGPGGIT 65

Query: 614 SVYNKAG 634
               +AG
Sbjct: 66  RAILEAG 72


>U29381-1|AAA68751.2|  133|Caenorhabditis elegans Hypothetical
           protein F35D11.5 protein.
          Length = 133

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 20/63 (31%), Positives = 42/63 (66%)
 Frame = +3

Query: 192 LKQAEIAYMKLIEERNRERVQKLQVISKRNRLTGFTIGAGVLGVYLYSIFAIKQETFLDD 371
           L + +  + K  E+ N+ERV+++   + +N ++   +   V+G+Y Y+++++KQETFL++
Sbjct: 55  LPRPQKRFAKQFEKVNQERVKEIFAKNYKNHISFAVLLGVVIGIYWYTMYSVKQETFLEE 114

Query: 372 FDE 380
            DE
Sbjct: 115 IDE 117


>U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical
           protein C37C3.1 protein.
          Length = 470

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 509 NFLMEPRLIDKIVRASGNIQNHTVCESWTRPGWNNSVYNK 628
           + LM+ +L+  I+ A+      T+C  W+  GW +SV+++
Sbjct: 67  SLLMDSKLMAAILEATCPKTMKTMCSKWSLKGWKDSVWDE 106


>AC024791-21|AAF60666.1|  749|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 6, isoform b protein.
          Length = 749

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 386 ENTAVIMAVAKTALQIRLPPL-PSIKDVIK 472
           EN AVI +  K   +I +PPL PS  DV+K
Sbjct: 360 ENKAVISSPKKEPEEIEVPPLPPSAPDVVK 389


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/65 (30%), Positives = 28/65 (43%)
 Frame = +2

Query: 197 AGRNSLYEINRREKSRTRSKITSDFETQSTDWLHDRSRSVGCLLVFYLRHQTGDVP*RFR 376
           AGRN  Y+I    K R  S+IT++  T S            C L+F L H+  +     R
Sbjct: 365 AGRNITYQIKYTLKDRNSSQITNEL-TDSNLKCPKFECQWKCALIFNLPHRPREYKFEIR 423

Query: 377 RAPEN 391
              +N
Sbjct: 424 AKVDN 428


>U64856-1|AAB04985.2|  429|Caenorhabditis elegans Hypothetical
           protein T25F10.3 protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 407 AVAKTALQIRLPPLPSIKDVIK 472
           AV++TA +  LPPLPS +D  K
Sbjct: 342 AVSRTARREALPPLPSYEDATK 363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,551,222
Number of Sequences: 27780
Number of extensions: 294960
Number of successful extensions: 714
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)