Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc26k23
(615 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces p... 38 9e-04
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb... 27 1.6
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 27 2.8
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy... 26 3.8
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ... 25 6.6
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 25 6.6
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 8.7
SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr 3... 25 8.7
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 25 8.7
>SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 111
Score = 38.3 bits (85), Expect = 9e-04
Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Frame = +1
Query: 208 EVQQIVRDNVELCLGGNAYSHSRTPQWITIITEKTLARLNKLNKPYKYIMRITITQK--- 378
++++I + + L + Y +T + + L LNK + YK+I+ T+ QK
Sbjct: 9 KLEEICLEAAQPVLKASEYDGDKTAEMNQSVIYAVLNALNKETQSYKWIVSSTLVQKLPE 68
Query: 379 --NGSGLHTAAAYYWDIATDGTCTVRWENKYMYCIVNIWALAL 501
G+H A A W+ DG T++ + + +++I +++
Sbjct: 69 DHPSRGVHAAHAACWNCEKDGMTTIKESGEAIDVVLSIMWISI 111
>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 116
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 256 SRPNTTLHCLLLSVALHRR*MLNHFTKIPLRHPLEPLVTIN 134
+RP +H S AL R + H T++ LR L P T N
Sbjct: 64 TRPTALIHITKYSEALASRLLKGHMTQLSLRTILPPAHTKN 104
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 558 LVVSSYIKNNVIRRGFLYLKSKRPYIHN 475
LV++ Y K + RRG YL+ P++ N
Sbjct: 68 LVINPYDKKVIWRRGLAYLRLGHPHLAN 95
>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -1
Query: 594 AMYTASAKHFEHLVVSSYIKNNVIRRGFLYLKSKRPYIHNAIH-VLIFPTHCARAICSDV 418
A+ TAS + FE + S + +++ FL+ S + N I ++I+P + I +++
Sbjct: 315 ALNTASVQWFERTLDDSSNRRSLLPEAFLFTDSVLKILLNVISGMVIYPKVIQKHIRAEL 374
Query: 417 P 415
P
Sbjct: 375 P 375
>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 81 VSLKYKIHHCKQVKRNKELIVTNGSRG 161
VS HCK+ K K++IV +RG
Sbjct: 113 VSFDLMARHCKKNKWKKKMIVLTAARG 139
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 398 QPLRTTGTSLQMARAQCVGKISTCIAL*IYGRLLFK 505
+ L T T+ ++A AQ VGK++ + L ++ + L+K
Sbjct: 557 EALLTVSTAFEIASAQGVGKLNLDLDLGLFVQRLYK 592
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -3
Query: 508 IFEEQAPIYSQCNTCTYFPNALCTCHL 428
+FE +AP + + CT + CHL
Sbjct: 1783 LFENKAPFVNSTSICTAVSESRSCCHL 1809
>SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 188
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 607 LFYLSYVYCFCETFRTPSRLIIH 539
L + + FC+T R P R+I H
Sbjct: 2 LINIEGIQAFCQTIRNPRRIIPH 24
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 25.0 bits (52), Expect = 8.7
Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Frame = +1
Query: 199 NVDEVQQIVRDNVELCLGGNAYSHSRTPQWITIITEKTLARLNKLNKP-YKYIMRITITQ 375
+V E+ + + L N Y +P + K+ + P + + + +
Sbjct: 578 HVPELYSVEEHSNVYSLLSNIYGRIESPITAWDVLSKSFPPGSMTGAPKLRSVRMLEPLE 637
Query: 376 KNGSGLHTAAAYYWDIATDGTCTVRWENKYMYCIVNIWAL 495
++G G+++ YWD+ V + + Y + W +
Sbjct: 638 QHGRGIYSGTLGYWDVTGSAEFNVIIRSAFKYKADDYWRI 677
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,492,040
Number of Sequences: 5004
Number of extensions: 51325
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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