Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc26k23
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71259-5|CAA95796.1|  106|Caenorhabditis elegans Hypothetical pr...    66   2e-11
U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical pr...    40   0.001
Z66500-5|CAA91306.1|  168|Caenorhabditis elegans Hypothetical pr...    40   0.001

>Z71259-5|CAA95796.1|  106|Caenorhabditis elegans Hypothetical
           protein F13G3.4 protein.
          Length = 106

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
 Frame = +1

Query: 205 DEVQQIVRDNVELCLGGNA-YSHSRTPQWITIITEKTLARLNKLNKPYKYIMRITITQ-K 378
           ++V  I++  ++  +G +  Y+H  + QW     E+   +L    KPYKY++  +  Q  
Sbjct: 6   EDVHMIIKQVLDEVVGASTQYTHKDSVQWNQKAVEQITKKLVAAGKPYKYVVTSSFLQIS 65

Query: 379 NGSGLHTAAAYYWDIATDGTCTVRWENKYMYCIVNIWALAL 501
           +GSGL+ +   YW+  TD +   RWE K M  IV ++A+A+
Sbjct: 66  SGSGLNVSTISYWNKVTDSSYMYRWEAKTMLAIVYVFAIAI 106


>U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical
           protein D1009.5 protein.
          Length = 123

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +1

Query: 319 RLNKLNKP-YKYIMRITITQKNGSGLHTAAAYYWDIATDGTCTVRWENKYMYCIVNIWAL 495
           RL  L  P YKY+++  I ++ G+G  TA    WD   DG  T R+    ++C V ++A+
Sbjct: 61  RLKGLQLPRYKYVIQTMIAEQCGNGATTAVQCVWDEDCDGYLTQRYVTGSIWCEVLVFAI 120


>Z66500-5|CAA91306.1|  168|Caenorhabditis elegans Hypothetical
           protein T05C12.5 protein.
          Length = 168

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = +1

Query: 208 EVQQIVRDNVELCLGGNAYSHSRTPQWITIITEKTLARLNKLNKPYKYIMRITITQKNGS 387
           E+  I++ + +  +G   YS  +   W++ + +     L KLN   K+++  TI+ K  +
Sbjct: 66  EIDLIIQKSFDSIIGKTPYSPFKMSDWMSKMIQTISDNLVKLNGSKKFLVHCTISAKTDN 125

Query: 388 -GLHTAAAYYWDIATDGTCTVRWENKYMYCIVNIW 489
             + TA    WD   D      W +K ++  V ++
Sbjct: 126 LAICTANMCSWDTTKDTAYYSEWMSKTIFGAVQVF 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,720,538
Number of Sequences: 27780
Number of extensions: 287564
Number of successful extensions: 644
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)